Model selection in ecology and evolution
JB Johnson, KS Omland - Trends in ecology & evolution, 2004 - cell.com
Recently, researchers in several areas of ecology and evolution have begun to change the
way in which they analyze data and make biological inferences. Rather than the traditional …
way in which they analyze data and make biological inferences. Rather than the traditional …
Molecularclock methods for estimating evolutionary rates and timescales
The molecular clock presents a means of estimating evolutionary rates and timescales using
genetic data. These estimates can lead to important insights into evolutionary processes and …
genetic data. These estimates can lead to important insights into evolutionary processes and …
The origins and molecular evolution of SARS-CoV-2 lineage B. 1.1. 7 in the UK
The first SARS-CoV-2 variant of concern (VOC) to be designated was lineage B. 1.1. 7, later
labelled by the World Health Organization as Alpha. Originating in early autumn but …
labelled by the World Health Organization as Alpha. Originating in early autumn but …
Early phylogenetic estimate of the effective reproduction number of SARSCoV2
A Lai, A Bergna, C Acciarri, M Galli… - Journal of medical …, 2020 - Wiley Online Library
To reconstruct the evolutionary dynamics of the 2019 novelcoronavirus recently causing an
outbreak in Wuhan, China, 52 SARSCoV2 genomes available on 4 February 2020 at …
outbreak in Wuhan, China, 52 SARSCoV2 genomes available on 4 February 2020 at …
[HTML][HTML] Model selection may not be a mandatory step for phylogeny reconstruction
Determining the most suitable model for phylogeny reconstruction constitutes a fundamental
step in numerous evolutionary studies. Over the years, various criteria for model selection …
step in numerous evolutionary studies. Over the years, various criteria for model selection …
[HTML][HTML] Molecular Evolution of Zika Virus during Its Emergence in the 20th Century
Zika virus (ZIKV) is a mosquito-borne flavivirus first isolated in Uganda in 1947. Although
entomological and virologic surveillance have reported ZIKV enzootic activity in diverse …
entomological and virologic surveillance have reported ZIKV enzootic activity in diverse …
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
F Ronquist, M Teslenko, P Van Der Mark… - Systematic …, 2012 - academic.oup.com
Since its introduction in 2001, MrBayes has grown in popularity as a software package for
Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With …
Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With …
Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and …
PCY Woo, SKP Lau, CSF Lam, CCY Lau… - Journal of …, 2012 - Am Soc Microbiol
Recently, we reported the discovery of three novel coronaviruses, bulbul coronavirus
HKU11, thrush coronavirus HKU12, and munia coronavirus HKU13, which were identified …
HKU11, thrush coronavirus HKU12, and munia coronavirus HKU13, which were identified …
The evolution of myrmicine ants: phylogeny and biogeography of a hyperdiverse ant clade (h ymenoptera: F ormicidae)
This study investigates the evolutionary history of a hyperdiverse clade, the ant subfamily M
yrmicinae (H ymenoptera: F ormicidae), based on analyses of a data matrix comprising 251 …
yrmicinae (H ymenoptera: F ormicidae), based on analyses of a data matrix comprising 251 …
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
Recent developments in marginal likelihood estimation for model selection in the field of
Bayesian phylogenetics and molecular evolution have emphasized the poor performance of …
Bayesian phylogenetics and molecular evolution have emphasized the poor performance of …