Making sense of genomic islands of differentiation in light of speciation

JBW Wolf, H Ellegren - Nature Reviews Genetics, 2017 - nature.com
As populations diverge, genetic differences accumulate across the genome. Spurred by
rapid developments in sequencing technology, genome-wide population surveys of natural …

(Non) parallel evolution

DI Bolnick, RDH Barrett, KB Oke… - Annual Review of …, 2018 - annualreviews.org
Parallel evolution across replicate populations has provided evolutionary biologists with
iconic examples of adaptation. When multiple populations colonize seemingly similar …

Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …

Genomic architecture of adaptive radiation and hybridization in Alpine whitefish

R De-Kayne, OM Selz, DA Marques, D Frei… - Nature …, 2022 - nature.com
Adaptive radiations represent some of the most remarkable explosions of diversification
across the tree of life. However, the constraints to rapid diversification and how they are …

On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes

L Bernatchez - Journal of Fish Biology, 2016 - Wiley Online Library
The first goal of this paper was to overview modern approaches to local adaptation, with a
focus on the use of population genomics data to detect signals of natural selection in fishes …

Seascape genomics provides evidence for thermal adaptation and current‐mediated population structure in American lobster (Homarus americanus)

L Benestan, BK Quinn, H Maaroufi, M Laporte… - Molecular …, 2016 - Wiley Online Library
Investigating how environmental features shape the genetic structure of populations is
crucial for understanding how they are potentially adapted to their habitats, as well as for …

Detecting polygenic evolution: problems, pitfalls, and promises

M Wellenreuther, B Hansson - TRENDS in Genetics, 2016 - cell.com
Unraveling the genetic basis of organismal form and function remains one of the major goals
of evolutionary biology. Theory has long supported a model of polygenic evolution in which …

Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

C Rougeux, L Bernatchez… - Genome biology and …, 2017 - academic.oup.com
Parallel divergence across replicated species pairs occurring in similar environmental
contrasts may arise through distinct evolutionary scenarios. Deciphering whether such …

RAD sequencing reveals within‐generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

M Laporte, SA Pavey, C Rougeux, F Pierron… - Molecular …, 2016 - Wiley Online Library
Measuring the effects of selection on the genome imposed by human‐altered environment is
currently a major goal in ecological genomics. Given the polygenic basis of most phenotypic …

How parallel is parallel evolution? A comparative analysis in fishes

KB Oke, G Rolshausen, C LeBlond… - The American …, 2017 - journals.uchicago.edu
Evidence of phenotypic parallelism is often used to infer the deterministic role played by
natural selection. However, variation in the extent or direction of divergence is often evident …