Genetic pathways in nonalcoholic fatty liver disease: insights from systems biology

S Sookoian, CJ Pirola, L Valenti, NO Davidson - Hepatology, 2020 - Wiley Online Library
Nonalcoholic fatty liver disease (NAFLD) represents a burgeoning worldwide epidemic
whose etiology reflects multiple interactions between environmental and genetic factors …

A single-cell atlas of human and mouse white adipose tissue

MP Emont, C Jacobs, AL Essene, D Pant, D Tenen… - Nature, 2022 - nature.com
White adipose tissue, once regarded as morphologically and functionally bland, is now
recognized to be dynamic, plastic and heterogenous, and is involved in a wide array of …

[PDF][PDF] AdipoAtlas: A reference lipidome for human white adipose tissue

M Lange, G Angelidou, Z Ni, A Criscuolo, J Schiller… - Cell Reports …, 2021 - cell.com
Obesity, characterized by expansion and metabolic dysregulation of white adipose tissue
(WAT), has reached pandemic proportions and acts as a primer for a wide range of …

An approach for normalization and quality control for NanoString RNA expression data

A Bhattacharya, AM Hamilton, H Furberg… - Briefings in …, 2021 - academic.oup.com
The NanoString RNA counting assay for formalin-fixed paraffin embedded samples is
unique in its sensitivity, technical reproducibility and robustness for analysis of clinical and …

Genetics of Type 2 Diabetes: Opportunities for Precision Medicine: JACC Focus Seminar

DS Kim, AL Gloyn, JW Knowles - Journal of the American College of …, 2021 - jacc.org
Abstract Type 2 diabetes (T2D) is highly prevalent and is a strong contributor for
cardiovascular disease. However, there is significant heterogeneity in disease pathogenesis …

[HTML][HTML] Consistent RNA sequencing contamination in GTEx and other data sets

TO Nieuwenhuis, SY Yang, RX Verma… - Nature …, 2020 - nature.com
A challenge of next generation sequencing is read contamination. We use Genotype-Tissue
Expression (GTEx) datasets and technical metadata along with RNA-seq datasets from other …

[PDF][PDF] Loci for insulin processing and secretion provide insight into type 2 diabetes risk

KA Broadaway, X Yin, A Williamson, VA Parsons… - The American Journal of …, 2023 - cell.com
Insulin secretion is critical for glucose homeostasis, and increased levels of the precursor
proinsulin relative to insulin indicate pancreatic islet beta-cell stress and insufficient insulin …

[HTML][HTML] Identification of TBX15 as an adipose master trans regulator of abdominal obesity genes

DZ Pan, Z Miao, C Comenho, S Rajkumar, A Koka… - Genome medicine, 2021 - Springer
Background Obesity predisposes individuals to multiple cardiometabolic disorders,
including type 2 diabetes (T2D). As body mass index (BMI) cannot reliably differentiate fat …

[HTML][HTML] ACE2 expression in adipose tissue is associated with cardio-metabolic risk factors and cell type composition—implications for COVID-19

JS El-Sayed Moustafa, AU Jackson… - International Journal of …, 2022 - nature.com
Background COVID-19 severity varies widely. Although some demographic and cardio-
metabolic factors, including age and obesity, are associated with increasing risk of severe …

[HTML][HTML] Identifying novel regulatory effects for clinically relevant genes through the study of the Greek population

K Rouskas, EA Katsareli, C Amerikanou… - BMC genomics, 2023 - Springer
Background Expression quantitative trait loci (eQTL) studies provide insights into regulatory
mechanisms underlying disease risk. Expanding studies of gene regulation to …