Systems biology of cellular rhythms

A Goldbeter, C Gérard, D Gonze, JC Leloup… - FEBS …, 2012 - Wiley Online Library
► Detailed survey of experimental and modeling approaches to cellular rhythms.► Cellular
rhythms in development: from cAMP oscillations to the segmentation clock.► Frequency …

Fundamental properties of Ca2+ signals

K Thurley, A Skupin, R Thul, M Falcke - Biochimica et Biophysica Acta (BBA …, 2012 - Elsevier
BACKGROUND: Ca2+ is a ubiquitous and versatile second messenger that transmits
information through changes of the cytosolic Ca2+ concentration. Recent investigations …

Calcium signals driven by single channel noise

A Skupin, H Kettenmann, M Falcke - PLoS computational biology, 2010 - journals.plos.org
Usually, the occurrence of random cell behavior is appointed to small copy numbers of
molecules involved in the stochastic process. Recently, we demonstrated for a variety of cell …

Stochastic models of intracellular calcium signals

S Rüdiger - Physics Reports, 2014 - Elsevier
Cellular signaling operates in a noisy environment shaped by low molecular concentrations
and cellular heterogeneity. For calcium release through intracellular channels–one of the …

An integrate-and-fire approach to Ca2+ signaling. Part I: Renewal model

L Ramlow, M Falcke, B Lindner - Biophysical Journal, 2023 - cell.com
In computational neuroscience integrate-and-fire models capture the spike generation by a
subthreshold dynamics supplemented by a simple fire-and-reset rule; they allow for a …

An integrate-and-fire approach to Ca2+ signaling. Part II: Cumulative refractoriness

L Ramlow, M Falcke, B Lindner - Biophysical Journal, 2023 - cell.com
Abstract Inositol 1, 4, 5-trisphosphate-induced Ca 2+ signaling is a second messenger
system used by almost all eukaryotic cells. The agonist concentration stimulating Ca 2+ …

[HTML][HTML] Models of stochastic spiking

VN Friedhoff, L Ramlow, B Lindner… - The European Physical …, 2021 - Springer
Complexity and limited knowledge render it impractical to write down the equations
describing a cellular system completely. Cellular biophysics uses hypotheses-based …

Deterministic limit of intracellular calcium spikes

V Voorsluijs, SP Dawson, Y De Decker, G Dupont - Physical review letters, 2019 - APS
In nonexcitable cells, global Ca 2+ spikes emerge from the collective dynamics of clusters of
Ca 2+ channels that are coupled by diffusion. Current modeling approaches have opposed …

Modeling IP 3-induced Ca 2+ signaling based on its interspike interval statistics

VN Friedhoff, B Lindner, M Falcke - Biophysical Journal, 2023 - cell.com
Abstract Inositol 1, 4, 5-trisphosphate (IP 3)-induced Ca 2+ signaling is a second messenger
system used by almost all eukaryotic cells. Recent research demonstrated randomness of …

Modeling-based investigation of the effect of noise in cellular systems

D Gonze, C Gérard, B Wacquier, A Woller… - Frontiers in Molecular …, 2018 - frontiersin.org
Noise is pervasive in cellular biology and inevitably affects the dynamics of cellular
processes. Biological systems have developed regulatory mechanisms to ensure …