MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

JD Tournier, R Smith, D Raffelt, R Tabbara… - Neuroimage, 2019 - Elsevier
MRtrix3 is an open-source, cross-platform software package for medical image processing,
analysis and visualisation, with a particular emphasis on the investigation of the brain using …

Deep learning-based electroencephalography analysis: a systematic review

Y Roy, H Banville, I Albuquerque… - Journal of neural …, 2019 - iopscience.iop.org
Context. Electroencephalography (EEG) is a complex signal and can require several years
of training, as well as advanced signal processing and feature extraction methodologies to …

A massive 7T fMRI dataset to bridge cognitive neuroscience and artificial intelligence

EJ Allen, G St-Yves, Y Wu, JL Breedlove… - Nature …, 2022 - nature.com
Extensive sampling of neural activity during rich cognitive phenomena is critical for robust
understanding of brain function. Here we present the Natural Scenes Dataset (NSD), in …

The OpenNeuro resource for sharing of neuroscience data

CJ Markiewicz, KJ Gorgolewski, F Feingold, R Blair… - Elife, 2021 - elifesciences.org
The sharing of research data is essential to ensure reproducibility and maximize the impact
of public investments in scientific research. Here, we describe OpenNeuro, a BRAIN …

[HTML][HTML] Best practices for fNIRS publications

MA Yücel, A Lühmann, F Scholkmann… - …, 2021 - spiedigitallibrary.org
The application of functional near-infrared spectroscopy (fNIRS) in the neurosciences has
been expanding over the last 40 years. Today, it is addressing a wide range of applications …

[HTML][HTML] Organoid intelligence (OI): the new frontier in biocomputing and intelligence-in-a-dish

L Smirnova, BS Caffo, DH Gracias, Q Huang… - Frontiers in …, 2023 - frontiersin.org
Biological computing (or biocomputing) offers potential advantages over silicon-based
computing in terms of faster decision-making, continuous learning during tasks, and greater …

Variability in the analysis of a single neuroimaging dataset by many teams

R Botvinik-Nezer, F Holzmeister, CF Camerer… - Nature, 2020 - nature.com
Data analysis workflows in many scientific domains have become increasingly complex and
flexible. Here we assess the effect of this flexibility on the results of functional magnetic …

Advances in human intracranial electroencephalography research, guidelines and good practices

MR Mercier, AS Dubarry, F Tadel, P Avanzini… - Neuroimage, 2022 - Elsevier
Since the second half of the twentieth century, intracranial electroencephalography (iEEG),
including both electrocorticography (ECoG) and stereo-electroencephalography (sEEG) …

fMRIPrep: a robust preprocessing pipeline for functional MRI

O Esteban, CJ Markiewicz, RW Blair, CA Moodie… - Nature …, 2019 - nature.com
Preprocessing of functional magnetic resonance imaging (fMRI) involves numerous steps to
clean and standardize the data before statistical analysis. Generally, researchers create ad …

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation

J Wen, E Thibeau-Sutre, M Diaz-Melo… - Medical image …, 2020 - Elsevier
Numerous machine learning (ML) approaches have been proposed for automatic
classification of Alzheimer's disease (AD) from brain imaging data. In particular, over 30 …