Machine learning algorithms translate big data into predictive breeding accuracy

J Crossa, OA Montesinos-Lopez, G Costa-Neto… - Trends in Plant …, 2024 - cell.com
Statistical machine learning (ML) extracts patterns from extensive genomic, phenotypic, and
environmental data. ML algorithms automatically identify relevant features and use cross …

[HTML][HTML] Assessment of ensemble learning to predict wheat grain yield based on UAV-multispectral reflectance

S Fei, MA Hassan, Z He, Z Chen, M Shu, J Wang, C Li… - Remote Sensing, 2021 - mdpi.com
Grain yield is increasingly affected by climate factors such as drought and heat. To develop
resilient and high-yielding cultivars, high-throughput phenotyping (HTP) techniques are …

Ideas in genomic selection with the potential to transform plant molecular breeding: a review

M McGowan, J Wang, H Dong, X Liu, Y Jia… - Plant breeding …, 2021 - Wiley Online Library
Estimation of breeding values through Best Linear Unbiased Prediction (BLUP) using
pedigree‐based kinship and Marker‐Assisted Selection (MAS) are the two fundamental …

Multi-trait genomic prediction of yield-related traits in US soft wheat under variable water regimes

J Guo, J Khan, S Pradhan, D Shahi, N Khan, M Avci… - Genes, 2020 - mdpi.com
The performance of genomic prediction (GP) on genetically correlated traits can be
improved through an interdependence multi-trait model under a multi-environment context …

Genome‐based prediction of multiple wheat quality traits in multiple years

MI Ibba, J Crossa, OA Montesinos‐López… - The plant …, 2020 - Wiley Online Library
Wheat quality improvement is an important objective in all wheat breeding programs.
However, due to the cost, time and quantity of seed required, wheat quality is typically …

Multi-trait genomic-enabled prediction enhances accuracy in multi-year wheat breeding trials

A Montesinos-López, DE Runcie, MI Ibba… - G3, 2021 - academic.oup.com
Implementing genomic-based prediction models in genomic selection requires an
understanding of the measures for evaluating prediction accuracy from different models and …

Integrating a growth degree-days based reaction norm methodology and multi-trait modeling for genomic prediction in wheat

MA Raffo, P Sarup, JR Andersen, J Orabi… - Frontiers in Plant …, 2022 - frontiersin.org
Multi-trait and multi-environment analyses can improve genomic prediction by exploiting
between-trait correlations and genotype-by-environment interactions. In the context of …

Partial least squares enhance multi-trait genomic prediction of potato cultivars in new environments

R Ortiz, F Reslow, A Montesinos-López, J Huicho… - Scientific reports, 2023 - nature.com
It is of paramount importance in plant breeding to have methods dealing with large numbers
of predictor variables and few sample observations, as well as efficient methods for dealing …

A comparison of three machine learning methods for multivariate genomic prediction using the sparse kernels method (SKM) library

OA Montesinos-López, A Montesinos-López… - Genes, 2022 - mdpi.com
Genomic selection (GS) changed the way plant breeders select genotypes. GS takes
advantage of phenotypic and genotypic information to training a statistical machine learning …

Multi-trait regressor stacking increased genomic prediction accuracy of sorghum grain composition

S Sapkota, JL Boatwright, K Jordan, R Boyles… - Agronomy, 2020 - mdpi.com
Genomic prediction has enabled plant breeders to estimate breeding values of unobserved
genotypes and environments. The use of genomic prediction will be extremely valuable for …