GR Dowdy, PI Barton - The Journal of chemical physics, 2018 - pubs.aip.org
The method of moments has been proposed as a potential means to reduce the dimensionality of the chemical master equation (CME) appearing in stochastic chemical …
M Reis, JA Kromer, E Klipp - Journal of mathematical biology, 2018 - Springer
Multimodality is a phenomenon which complicates the analysis of statistical data based exclusively on mean and variance. Here, we present criteria for multimodality in hierarchic …
GR Dowdy, PI Barton - The Journal of chemical physics, 2018 - pubs.aip.org
Applying the method of moments to the chemical master equation appearing in stochastic chemical kinetics often leads to the so-called closure problem. Recently, several authors …
Perturbation bounds are powerful tools for investigating the phenomenon of insensitivity to perturbations, also referred to as stability, for stochastic and deterministic systems. This …
Deterministic and stochastic models of chemical reaction kinetics can give starkly different results when the deterministic model exhibits more than one stable solution. For example, in …
Many chemical reaction networks in biological systems present complex oscillatory dynamics. In systems such as regulatory gene networks, cell cycle, and enzymatic …
We present a new method for calculating the time-transient behavior of stochastic reaction networks. We first derive the set of equations for the moments of the master probability …
We use an example to present in exhaustive detail the algorithmic steps of the zero- information (ZI) closure scheme (Smadbeck and Kaznessis, Proc Natl Acad Sci USA 110 …
Distributions appear in many forms in models of chemical engineering systems. Such distributions account for microscopic variability in the system while simultaneously …