Optogenetics for light control of biological systems

V Emiliani, E Entcheva, R Hedrich… - Nature Reviews …, 2022 - nature.com
Optogenetic techniques have been developed to allow control over the activity of selected
cells within a highly heterogeneous tissue, using a combination of genetic engineering and …

Fluorescence imaging of large-scale neural ensemble dynamics

TH Kim, MJ Schnitzer - Cell, 2022 - cell.com
Recent progress in fluorescence imaging allows neuroscientists to observe the dynamics of
thousands of individual neurons, identified genetically or by their connectivity, across …

Comparative cellular analysis of motor cortex in human, marmoset and mouse

TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian… - Nature, 2021 - nature.com
The primary motor cortex (M1) is essential for voluntary fine-motor control and is functionally
conserved across mammals. Here, using high-throughput transcriptomic and epigenomic …

Chromatin accessibility profiling methods

L Minnoye, GK Marinov, T Krausgruber, L Pan… - Nature Reviews …, 2021 - nature.com
Chromatin accessibility, or the physical access to chromatinized DNA, is a widely studied
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …

Massively parallel reporter assays: defining functional psychiatric genetic variants across biological contexts

B Mulvey, T Lagunas Jr, JD Dougherty - Biological psychiatry, 2021 - Elsevier
Neuropsychiatric phenotypes have long been known to be influenced by heritable risk
factors, directly confirmed by the past decade of genetic studies that have revealed specific …

Seeing the forest and its trees together: implementing 3D light microscopy pipelines for cell type mapping in the mouse brain

KT Newmaster, FA Kronman, Y Wu… - Frontiers in neuroanatomy, 2022 - frontiersin.org
The brain is composed of diverse neuronal and non-neuronal cell types with complex
regional connectivity patterns that create the anatomical infrastructure underlying cognition …

A multimodal cell census and atlas of the mammalian primary motor cortex

BRAIN Initiative Cell Census Network (BICCN)… - Biorxiv, 2020 - biorxiv.org
We report the generation of a multimodal cell census and atlas of the mammalian primary
motor cortex (MOp or M1) as the initial product of the BRAIN Initiative Cell Census Network …

Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex

MH Kim, C Radaelli, ER Thomsen, D Monet… - Elife, 2023 - elifesciences.org
Rodent studies have demonstrated that synaptic dynamics from excitatory to inhibitory
neuron types are often dependent on the target cell type. However, these target cell-specific …

Linking axon morphology to gene expression: a strategy for neuronal cell-type classification

J Winnubst, N Spruston, JA Harris - Current Opinion in Neurobiology, 2020 - Elsevier
To study how the brain drives cognition and behavior we need to understand its cellular
composition. Advances in single-cell transcriptomics have revolutionized our ability to …

Signature morpho-electric, transcriptomic, and dendritic properties of extratelencephalic-projecting human layer 5 neocortical pyramidal neurons

BE Kalmbach, RD Hodge, NL Jorstad, S Owen… - bioRxiv, 2020 - biorxiv.org
In the neocortex, subcerebral axonal projections originate largely from layer 5 (L5)
extratelencephalic-projecting (ET) neurons. The highly distinctive morpho-electric properties …