Common principles and best practices for engineering microbiomes

CE Lawson, WR Harcombe, R Hatzenpichler… - Nature Reviews …, 2019 - nature.com
Despite broad scientific interest in harnessing the power of Earth's microbiomes, knowledge
gaps hinder their efficient use for addressing urgent societal and environmental challenges …

Microbial adaptation to enhance stress tolerance

YS Tan, RK Zhang, ZH Liu, BZ Li, YJ Yuan - Frontiers in Microbiology, 2022 - frontiersin.org
Microbial cell factories have been widely used in the production of various chemicals.
Although synthetic biology is useful in improving the cell factories, adaptation is still widely …

Non‐gene‐editing microbiome engineering of spontaneous food fermentation microbiota—Limitation control, design control, and integration

L Chen, G Wang, M Teng, L Wang… - … Reviews in Food …, 2023 - Wiley Online Library
Non‐gene‐editing microbiome engineering (NgeME) is the rational design and control of
natural microbial consortia to perform desired functions. Traditional NgeME approaches use …

Interspecific hybridization as a driver of fungal evolution and adaptation

J Steensels, B Gallone, KJ Verstrepen - Nature Reviews Microbiology, 2021 - nature.com
Cross-species gene transfer is often associated with bacteria, which have evolved several
mechanisms that facilitate horizontal DNA exchange. However, the increased availability of …

Interspecific hybridization facilitates niche adaptation in beer yeast

B Gallone, J Steensels, S Mertens, MC Dzialo… - Nature Ecology & …, 2019 - nature.com
Hybridization between species often leads to non-viable or infertile offspring, yet examples
of evolutionarily successful interspecific hybrids have been reported in all kingdoms of life …

Bacterial–fungal interactions promote parallel evolution of global transcriptional regulators in a widespread Staphylococcus species

CM Cosetta, B Niccum, N Kamkari, M Dente… - The ISME …, 2023 - academic.oup.com
Experimental studies of microbial evolution have largely focused on monocultures of model
organisms, but most microbes live in communities where interactions with other species may …

Convergence in domesticated fungi used for cheese and dry-cured meat maturation: beneficial traits, genomic mechanisms, and degeneration

J Ropars, T Giraud - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Distant fungal lineages have been domesticated for cheese-or salami-
making.•Multiple independent domestication events occurred within fungal species.•Parallel …

[PDF][PDF] Tasting the terroir of wine yeast innovation

IS Pretorius - FEMS yeast research, 2020 - academic.oup.com
Wine is an archetypal traditional fermented beverage with strong territorial and socio-cultural
connotations. Its 7000 year history is patterned by a tradition of innovation. Every value …

Opportunities and challenges of understanding community assembly in spontaneous food fermentation

M Mudoor Sooresh, BP Willing, BCT Bourrie - Foods, 2023 - mdpi.com
Spontaneous fermentations that do not rely on backslopping or industrial starter cultures
were especially important to the early development of society and are still practiced around …

Saccharomyces cerevisiae biomass as a source of next‐generation food preservatives: Evaluating potential proteins as a source of antimicrobial peptides

PR Pereira, CS Freitas… - … reviews in food science …, 2021 - Wiley Online Library
Saccharomyces cerevisiae is the main biotechnological tool for the production of Baker's or
Brewer's biomasses, largely applied in beverage and fermented‐food production. Through …