Computational Methods for Modeling Lipid-Mediated Active Pharmaceutical Ingredient Delivery

M Paloncýová, M Valério, RN Dos Santos… - Molecular …, 2025 - ACS Publications
Lipid-mediated delivery of active pharmaceutical ingredients (API) opened new possibilities
in advanced therapies. By encapsulating an API into a lipid nanocarrier (LNC), one can …

Perspectives on Molecular Simulation of CO2/CH4 Competitive Adsorption in a Shale Matrix: A Review

Y Sun, Y Ma, B Yu, W Zhang, L Zhang, P Chen… - Energy & …, 2024 - ACS Publications
With the increasing global energy demand, unconventional oil and gas, especially shale
gas, have become an important natural gas resource. In the modern petroleum engineering …

A formally exact theory to construct nonreactive forcefields using linear regression to optimize bonded parameters

TA Manz - RSC advances, 2024 - pubs.rsc.org
This article derives theoretical foundations of force field functional theory (FFFT). FFFT
studies topics related to the functional representation of nonreactive forcefields to achieve …

[HTML][HTML] Research Progress and Outlook of Molecular Dynamics Simulation on Carbon Dioxide Applied for Methane Exploitation from Hydrates

Q Yu, C Li, B Peng, H Tang, T Yang, Y Yu, K Zhang… - Molecules, 2024 - mdpi.com
Research progress of carbon dioxide applied for methane exploitation from hydrates is
summarized, with a focus on advances in molecular dynamics simulations and their …

The effect of functional groups on the glass transition temperature of atmospheric organic compounds: a molecular dynamics study

P Siachouli, KS Karadima, VG Mavrantzas, SN Pandis - Soft Matter, 2024 - pubs.rsc.org
Organic compounds constitute a substantial part of atmospheric particulate matter not only in
terms of mass concentration but also in terms of distinct functional groups. The glass …

Enthalpies and entropies of hydration from Monte Carlo simulations

WL Jorgensen - Physical Chemistry Chemical Physics, 2024 - pubs.rsc.org
The changes in free energy, enthalpy, and entropy for transfer of a solute from the gas phase
into solution are the fundamental thermodynamic quantities that characterize the solvation …

Monte Carlo simulations for free energies of hydration: Past to present

WL Jorgensen - The Journal of Chemical Physics, 2024 - pubs.aip.org
A summary of the development of Monte Carlo statistical mechanics simulations for the
computation of free energies of hydration of organic molecules is followed by presentation of …

A Reverse Nonequilibrium Molecular Dynamics Algorithm for Coupled Mass and Heat Transport in Mixtures

CR Drisko, JD Gezelter - Journal of Chemical Theory and …, 2024 - ACS Publications
We present a new method for introducing stable nonequilibrium concentration gradients in
molecular dynamics simulations of mixtures. This method extends earlier reverse …

Molecular Mechanistic Analysis of Liquid-Crystalline Polymers Composed of p-Hydroxybenzoic Acid I: Thermal Properties

K Fujimoto, H Ishikawa, M Shimooka… - The Journal of …, 2025 - ACS Publications
All-atom molecular dynamics (MD) calculations of the crystalline polymeric p-
hydroxybenzoic acid (p HBA) were conducted at various temperatures to investigate its …

[HTML][HTML] Critical assessment of diffusion coefficients of benzene and its derivatives in supercritical carbon dioxide: Experimental data, molecular dynamics simulations …

WQ Rios, JRB Gomes, CM Silva - Journal of Molecular Liquids, 2024 - Elsevier
The tracer diffusion coefficient (D 12) is a critical transport property essential for research,
design and optimization of industrial processes. However, experimental determination of D …