Identification of neoantigens for individualized therapeutic cancer vaccines

F Lang, B Schrörs, M Löwer, Ö Türeci… - Nature reviews Drug …, 2022 - nature.com
Somatic mutations in cancer cells can generate tumour-specific neoepitopes, which are
recognized by autologous T cells in the host. As neoepitopes are not subject to central …

A few good peptides: MHC class I-based cancer immunosurveillance and immunoevasion

D Dersh, J Hollý, JW Yewdell - Nature Reviews Immunology, 2021 - nature.com
The remarkable success of immune checkpoint inhibitors demonstrates the potential of
tumour-specific CD8+ T cells to prevent and treat cancer. Although the number of lives …

A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design

Y Chu, Y Zhang, Q Wang, L Zhang, X Wang… - Nature Machine …, 2022 - nature.com
Human leukocyte antigen (HLA) can recognize and bind foreign peptides to present them to
specialized immune cells, then initiate an immune response. Computational prediction of the …

Antitumour dendritic cell vaccination in a priming and boosting approach

A Harari, M Graciotti, M Bassani-Sternberg… - Nature Reviews Drug …, 2020 - nature.com
Mobilizing antitumour immunity through vaccination potentially constitutes a powerful
anticancer strategy but has not yet provided robust clinical benefits in large patient …

Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening

S Basith, B Manavalan, T Hwan Shin… - Medicinal research …, 2020 - Wiley Online Library
Discovery and development of biopeptides are time‐consuming, laborious, and dependent
on various factors. Data‐driven computational methods, especially machine learning (ML) …

Therapeutic cancer vaccines: advancements, challenges, and prospects

T Fan, M Zhang, J Yang, Z Zhu, W Cao… - Signal Transduction and …, 2023 - nature.com
With the development and regulatory approval of immune checkpoint inhibitors and adoptive
cell therapies, cancer immunotherapy has undergone a profound transformation over the …

Systematic discovery of neoepitope–HLA pairs for neoantigens shared among patients and tumor types

HR Gurung, AJ Heidersbach, M Darwish… - Nature …, 2024 - nature.com
The broad application of precision cancer immunotherapies is limited by the number of
validated neoepitopes that are common among patients or tumor types. To expand the …

Designing neoantigen cancer vaccines, trials, and outcomes

N Biswas, S Chakrabarti, V Padul, LD Jones… - Frontiers in …, 2023 - frontiersin.org
Neoantigen vaccines are based on epitopes of antigenic parts of mutant proteins expressed
in cancer cells. These highly immunogenic antigens may trigger the immune system to …

SYNBIP: synthetic binding proteins for research, diagnosis and therapy

X Wang, F Li, W Qiu, B Xu, Y Li, X Lian… - Nucleic acids …, 2022 - academic.oup.com
The success of protein engineering and design has extensively expanded the protein space,
which presents a promising strategy for creating next-generation proteins of diverse …

DeepTorrent: a deep learning-based approach for predicting DNA N4-methylcytosine sites

Q Liu, J Chen, Y Wang, S Li, C Jia… - Briefings in …, 2021 - academic.oup.com
Abstract DNA N4-methylcytosine (4mC) is an important epigenetic modification that plays a
vital role in regulating DNA replication and expression. However, it is challenging to detect …