Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison

B Song, F Li, Y Liu, X Zeng - Briefings in Bioinformatics, 2021 - academic.oup.com
The biomedical literature is growing rapidly, and the extraction of meaningful information
from the large amount of literature is increasingly important. Biomedical named entity …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

CHEMDNER: The drugs and chemical names extraction challenge

M Krallinger, F Leitner, O Rabal, M Vazquez… - Journal of …, 2015 - Springer
Natural language processing (NLP) and text mining technologies for the chemical domain
(ChemNLP or chemical text mining) are key to improve the access and integration of …

[HTML][HTML] Character level and word level embedding with bidirectional LSTM–Dynamic recurrent neural network for biomedical named entity recognition from literature

S Gajendran, D Manjula, V Sugumaran - Journal of Biomedical Informatics, 2020 - Elsevier
Abstract Named Entity Recognition is the process of identifying different entities in a given
context. Biomedical Named Entity Recognition (BNER) is the task of extracting chemical …

Improving biomedical named entity recognition with syntactic information

Y Tian, W Shen, Y Song, F Xia, M He, K Li - BMC bioinformatics, 2020 - Springer
Background Biomedical named entity recognition (BioNER) is an important task for
understanding biomedical texts, which can be challenging due to the lack of large-scale …

Chemu 2020: Natural language processing methods are effective for information extraction from chemical patents

J He, DQ Nguyen, SA Akhondi… - Frontiers in Research …, 2021 - frontiersin.org
Chemical patents represent a valuable source of information about new chemical
compounds, which is critical to the drug discovery process. Automated information extraction …

Automatic identification of relevant chemical compounds from patents

SA Akhondi, H Rey, M Schwörer, M Maier, J Toomey… - Database, 2019 - academic.oup.com
In commercial research and development projects, public disclosure of new chemical
compounds often takes place in patents. Only a small proportion of these compounds are …

Improving biomedical named entity recognition through transfer learning and asymmetric tri-training

M Bhattacharya, S Bhat, S Tripathy, A Bansal… - Procedia Computer …, 2023 - Elsevier
Today, electronic health records have turned into prime sources of information for physicians
looking after their patients. EHRs and computerized patient data resources have expedited …

Putting hands to rest: efficient deep CNN-RNN architecture for chemical named entity recognition with no hand-crafted rules

I Korvigo, M Holmatov, A Zaikovskii… - Journal of …, 2018 - Springer
Chemical named entity recognition (NER) is an active field of research in biomedical natural
language processing. To facilitate the development of new and superior chemical NER …

A prefix and attention map discrimination fusion guided attention for biomedical named entity recognition

Z Guan, X Zhou - BMC bioinformatics, 2023 - Springer
Background The biomedical literature is growing rapidly, and it is increasingly important to
extract meaningful information from the vast amount of literature. Biomedical named entity …