Modifications and functional genomics of human transfer RNA

T Pan - Cell research, 2018 - nature.com
Transfer RNA (tRNA) is present at tens of millions of transcripts in a human cell and is the
most abundant RNA in moles among all cellular RNAs. tRNA is also the most extensively …

Codon optimality-mediated mRNA degradation: Linking translational elongation to mRNA stability

H Bae, J Coller - Molecular cell, 2022 - cell.com
Messenger RNA (mRNA) translation by the ribosome represents the final step of a
complicated molecular dance from DNA to protein. Although classically considered a …

High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq

A Behrens, G Rodschinka, DD Nedialkova - Molecular cell, 2021 - cell.com
Measurements of cellular tRNA abundance are hampered by pervasive blocks to cDNA
synthesis at modified nucleosides and the extensive similarity among tRNA genes. We …

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

A Srivastava, L Malik, T Smith, I Sudbery, R Patro - Genome biology, 2019 - Springer
We introduce alevin, a fast end-to-end pipeline to process droplet-based single-cell RNA
sequencing data, performing cell barcode detection, read mapping, unique molecular …

The regulation of protein translation and its implications for cancer

P Song, F Yang, H Jin, X Wang - Signal transduction and targeted …, 2021 - nature.com
In addition to the deregulation of gene transcriptions and post-translational protein
modifications, the aberrant translation from mRNAs to proteins plays an important role in the …

Regulation of mRNA translation in neurons—a matter of life and death

M Kapur, CE Monaghan, SL Ackerman - Neuron, 2017 - cell.com
Dynamic regulation of mRNA translation initiation and elongation is essential for the survival
and function of neural cells. Global reductions in translation initiation resulting from …

Selective gene expression maintains human tRNA anticodon pools during differentiation

L Gao, A Behrens, G Rodschinka, S Forcelloni… - Nature Cell …, 2024 - nature.com
Transfer RNAs are essential for translating genetic information into proteins. The human
genome contains hundreds of predicted tRNA genes, many in multiple copies. How their …

Pausing on polyribosomes: make way for elongation in translational control

JD Richter, J Coller - Cell, 2015 - cell.com
Among the three phases of mRNA translation—initiation, elongation, and termination—
initiation has traditionally been considered to be rate limiting and thus the focus of …

RNA polymerase III transcription as a disease factor

M Yeganeh, N Hernandez - Genes & development, 2020 - genesdev.cshlp.org
RNA polymerase (Pol) III is responsible for transcription of different noncoding genes in
eukaryotic cells, whose RNA products have well-defined functions in translation and other …

tRNA dysregulation in neurodevelopmental and neurodegenerative diseases

RW Burgess, E Storkebaum - Annual review of cell and …, 2023 - annualreviews.org
Transfer RNAs (tRNAs) decode messenger RNA codons to peptides at the ribosome. The
nuclear genome contains many tRNA genes for each amino acid and even each anticodon …