Circulating DNA fragmentomics and cancer screening

AR Thierry - Cell Genomics, 2023 - cell.com
The high fragmentation of nuclear circulating DNA (cirDNA) relies on chromatin organization
and protection or packaging within mononucleosomes, the smallest and the most stabilized …

Leveraging the fragment length of circulating tumour DNA to improve molecular profiling of solid tumour malignancies with next-generation sequencing: a pathway to …

HR Underhill - Molecular diagnosis & therapy, 2021 - Springer
Circulating cell-free DNA (ccfDNA) has emerged as a promising diagnostic tool in oncology.
Identification of tumour-derived ccfDNA (ie circulating tumour DNA [ctDNA]) provides non …

NucPosDB: a database of nucleosome positioning in vivo and nucleosomics of cell-free DNA

M Shtumpf, KV Piroeva, SP Agrawal, DR Jacob, VB Teif - Chromosoma, 2022 - Springer
Nucleosome positioning is involved in many gene regulatory processes happening in the
cell, and it may change as cells differentiate or respond to the changing microenvironment in …

Molecular diagnosis of diffuse glioma using a chip-based digital PCR system to analyze IDH, TERT, and H3 mutations in the cerebrospinal fluid

Y Fujioka, N Hata, Y Akagi, D Kuga, R Hatae… - Journal of Neuro …, 2021 - Springer
Purpose Conventional genetic analyzers require surgically obtained tumor tissues to confirm
the molecular diagnosis of diffuse glioma. Recent technical breakthroughs have enabled …

Ultrasensitive plasma-based monitoring of tumor burden using machine-learning-guided signal enrichment

AJ Widman, M Shah, A Frydendahl, D Halmos… - Nature Medicine, 2024 - nature.com
In solid tumor oncology, circulating tumor DNA (ctDNA) is poised to transform care through
accurate assessment of minimal residual disease (MRD) and therapeutic response …

Recent advancements in nanoparticle-based optical biosensors for circulating cancer biomarkers

C Amri, AK Shukla, JH Lee - Materials, 2021 - mdpi.com
The effectiveness of cancer treatment strongly depends on the early detection of the
disease. Currently, the most common diagnostic method, tissue biopsy, takes time and can …

Plasma concentrations and cancer-associated mutations in cell-free circulating DNA of treatment-naive follicular lymphoma for improved non-invasive diagnosis and …

T Hatipoğlu, E Esmeray Sönmez, X Hu, H Yuan… - Frontiers in …, 2022 - frontiersin.org
Follicular lymphoma (FL) is the second most frequent non-Hodgkin lymphoma accounting
for 10-20% of all lymphomas in western countries. As a clinically heterogeneous cancer, FL …

Multidimensional fragmentomic profiling of cell-free DNA released from patient-derived organoids

J Kim, SP Hong, S Lee, W Lee, D Lee, R Kim, YJ Park… - Human Genomics, 2023 - Springer
Background Fragmentomics, the investigation of fragmentation patterns of cell-free DNA
(cfDNA), has emerged as a promising strategy for the early detection of multiple cancers in …

Single-stranded pre-methylated 5mC adapters uncover the methylation profile of plasma ultrashort Single-stranded cell-free DNA

JC Cheng, N Swarup, M Morselli… - Nucleic Acids …, 2024 - academic.oup.com
Whole-genome bisulfite sequencing (BS-Seq) measures cytosine methylation changes at
single-base resolution and can be used to profile cell-free DNA (cfDNA). In plasma …

[HTML][HTML] Liquid biopsy approach to pancreatic cancer

S Perales, C Torres, C Jimenez-Luna… - World journal of …, 2021 - ncbi.nlm.nih.gov
Pancreatic cancer (PC) continues to pose a major clinical challenge. There has been little
improvement in patient survival over the past few decades, and it is projected to become the …