New approaches for inferring phylogenies in the presence of paralogs
The availability of whole genome sequences was expected to supply essentially unlimited
data for phylogenetics. However, strict reliance on single-copy genes for this purpose has …
data for phylogenetics. However, strict reliance on single-copy genes for this purpose has …
Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow
The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent
vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 …
vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 …
A genomic timescale for placental mammal evolution
The precise pattern and timing of speciation events that gave rise to all living placental
mammals remain controversial. We provide a comprehensive phylogenetic analysis of …
mammals remain controversial. We provide a comprehensive phylogenetic analysis of …
To include or not to include: the impact of gene filtering on species tree estimation methods
With the increasing availability of whole genome data, many species trees are being
constructed from hundreds to thousands of loci. Although concatenation analysis using …
constructed from hundreds to thousands of loci. Although concatenation analysis using …
Genomewide SNP markers breathe new life into phylogeography and species delimitation for the problematic short‐necked turtles (Chelidae: Emydura) of eastern …
Understanding the evolutionary history of diversifying lineages and the delineation of
evolutionarily significant units and species remains major challenges for evolutionary …
evolutionarily significant units and species remains major challenges for evolutionary …
Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
Background Despite considerable effort, progress in spider molecular systematics has
lagged behind many other comparable arthropod groups, thereby hindering family-level …
lagged behind many other comparable arthropod groups, thereby hindering family-level …
Species delimitation in endangered groundwater salamanders: Implications for aquifer management and biodiversity conservation
Groundwater-dependent species are among the least-known components of global
biodiversity, as well as some of the most vulnerable because of rapid groundwater depletion …
biodiversity, as well as some of the most vulnerable because of rapid groundwater depletion …
A comparative study of SVDquartets and other coalescent-based species tree estimation methods
Background Species tree estimation is challenging in the presence of incomplete lineage
sorting (ILS), which can make gene trees different from the species tree. Because ILS is …
sorting (ILS), which can make gene trees different from the species tree. Because ILS is …
[图书][B] Computational phylogenetics: an introduction to designing methods for phylogeny estimation
T Warnow - 2018 - books.google.com
A comprehensive account of both basic and advanced material in phylogeny estimation,
focusing on computational and statistical issues. No background in biology or computer …
focusing on computational and statistical issues. No background in biology or computer …
Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci …
The widespread adoption of RAD-Seq data in phylogeography means genealogical
relationships previously evaluated using relatively few genetic markers can now be …
relationships previously evaluated using relatively few genetic markers can now be …