Single copy oligonucleotide fluorescence in situ hybridization probe design platforms: development, application and evaluation

G Liu, T Zhang - International Journal of Molecular Sciences, 2021 - mdpi.com
Oligonucleotides fluorescence in situ hybridization (Oligo-FISH) is an emerging technology
and is an important tool in research areas such as detection of chromosome variation …

Oligonucleotide Fluorescence In Situ Hybridization: An Efficient Chromosome Painting Method in Plants

A Harun, H Liu, S Song, S Asghar, X Wen, Z Fang… - Plants, 2023 - mdpi.com
Fluorescence in situ hybridization (FISH) is an indispensable technique for studying
chromosomes in plants. However, traditional FISH methods, such as BAC, rDNA, tandem …

Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon

JN Vaughn, SE Branham, B Abernathy… - Nature …, 2022 - nature.com
The genomic sequences segregating in experimental populations are often highly divergent
from the community reference and from one another. Such divergence is problematic under …

Conversion of hulled into naked barley by Cas endonuclease-mediated knockout of the NUD gene

SV Gerasimova, C Hertig, AM Korotkova… - BMC Plant …, 2020 - Springer
Background The naked caryopsis character in barley is a domestication-associated trait
defined by loss-of-function of the NUD gene. The functional NUD gene encodes an Apetala …

Supernumerary B chromosomes of Aegilops speltoides undergo precise elimination in roots early in embryo development

A Ruban, T Schmutzer, DD Wu, J Fuchs… - Nature …, 2020 - nature.com
Not necessarily all cells of an organism contain the same genome. Some eukaryotes exhibit
dramatic differences between cells of different organs, resulting from programmed …

K‐mer counting and curated libraries drive efficient annotation of repeats in plant genomes

B Contreras‐Moreira, CV Filippi, G Naamati… - The plant …, 2021 - Wiley Online Library
The annotation of repetitive sequences within plant genomes can help in the interpretation
of observed phenotypes. Moreover, repeat masking is required for tasks such as whole …

Efficient masking of plant genomes by combining kmer counting and curated repeats

B Contreras-Moreira, CV Filippi, G Naamati, CG Girón… - bioRxiv, 2021 - biorxiv.org
Ii. Summary/Abstract The annotation of repetitive sequences within plant genomes can help
in the interpretation of observed phenotypes. Moreover, repeat masking is required for tasks …

Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance

JN Vaughn, SE Branham, BL Abernathy… - bioRxiv, 2022 - biorxiv.org
The genomic sequences segregating in experimental populations are often highly divergent
from the community reference and from one another. Such divergence is problematic under …

[PDF][PDF] Oligonucleotide Fluorescence In Situ Hybridization: An Efficient Chromosome Painting Method in Plants. Plants 2023, 12, 2816

A Harun, H Liu, S Song, S Asghar, X Wen, Z Fang… - 2023 - academia.edu
Fluorescence in situ hybridization (FISH) is an indispensable technique for studying
chromosomes in plants. However, traditional FISH methods, such as BAC, rDNA, tandem …

Beeinflussung des Ertragspotentials von Gerste und Weizen durch Modifikation ährenarchitektonischer Eigenschaften mittels Cas-Endonuklease-vermittelter …

CW Hertig - 2023 - repo.uni-hannover.de
Die vorliegende Arbeit beschreibt die Anwendung des Genome Engineerings mittels RNA-
vermittelter Cas9-Endonuklease in den Getreidearten Weizen und Gerste. Dieses neue …