From trash to luxury: the potential role of plant lncRNA in DNA methylation during abiotic stress

MCO Urquiaga, F Thiebaut, AS Hemerly… - Frontiers in Plant …, 2021 - frontiersin.org
Remarkable progress has been made in elucidating important roles of plant non-coding
RNAs. Among these RNAs, long noncoding RNAs (lncRNAs) have gained widespread …

Feature extraction approaches for biological sequences: a comparative study of mathematical features

RP Bonidia, LDH Sampaio… - Briefings in …, 2021 - academic.oup.com
As consequence of the various genomic sequencing projects, an increasing volume of
biological sequence data is being produced. Although machine learning algorithms have …

Drought forecasting by ANN, ANFIS, and SVM and comparison of the models

M Mokhtarzad, F Eskandari, N Jamshidi Vanjani… - Environmental earth …, 2017 - Springer
Drought is a natural disaster that causes significant impact on all parts of environment and
cause to reduction of the agricultural products. Other natural phenomena, for instance …

Analysis of soybean long non-coding RNAs reveals a subset of small peptide-coding transcripts

X Lin, W Lin, YS Ku, FL Wong, MW Li, HM Lam… - Plant …, 2020 - academic.oup.com
Long non-coding RNAs (lncRNAs) are defined as non-protein–coding transcripts that are at
least 200 nucleotides long. They are known to play pivotal roles in regulating gene …

A comprehensive comparison and analysis of computational predictors for RNA N6-methyladenosine sites of Saccharomyces cerevisiae

X Zhu, J He, S Zhao, W Tao, Y Xiong… - Briefings in Functional …, 2019 - academic.oup.com
Abstract N6-methyladenosine (m6A) modification, as one of the commonest post-
transcription modifications in RNAs, has been reported to be highly related to many …

LncRNAs: genetic and epigenetic effects in plants

E Karlik, S Ari, N Gozukirmizi - Biotechnology & Biotechnological …, 2019 - Taylor & Francis
Long non-coding RNAs (lncRNAs) transcribed from the eukaryotic genome play important
roles in essential biological processes, transcriptional and post-transcriptional gene …

[HTML][HTML] The computational approaches of lncRNA identification based on coding potential: status quo and challenges

J Li, X Zhang, C Liu - Computational and Structural Biotechnology Journal, 2020 - Elsevier
Long noncoding RNAs (lncRNAs) make up a large proportion of transcriptome in
eukaryotes, and have been revealed with many regulatory functions in various biological …

A hybrid prediction method for plant lncRNA-protein interaction

JS Wekesa, Y Luan, M Chen, J Meng - Cells, 2019 - mdpi.com
Long non-protein-coding RNAs (lncRNAs) identification and analysis are pervasive in
transcriptome studies due to their roles in biological processes. In particular, lncRNA-protein …

CicerSpTEdb: A web-based database for high-resolution genome-wide identification of transposable elements in Cicer species

MM Mokhtar, AM Alsamman, HM Abd-Elhalim… - Plos one, 2021 - journals.plos.org
Recently, Cicer species have experienced increased research interest due to their economic
importance, especially in genetics, genomics, and crop improvement. The Cicer arietinum …

Epigenetic alterations in DCIS progression: what can lncRNAs teach us?

I Petrone, EC Santos, R Binato, E Abdelhay - International journal of …, 2023 - mdpi.com
Some transcripts that are not translated into proteins can be encoded by the mammalian
genome. Long noncoding RNAs (lncRNAs) are noncoding RNAs that can function as …