Arabidopsis halleri: a perennial model system for studying population differentiation and local adaptation
Local adaptation is assumed to occur when populations differ in a phenotypic trait or a set of
traits, and such variation has a genetic basis. Here, we introduce Arabidopsis halleri and its …
traits, and such variation has a genetic basis. Here, we introduce Arabidopsis halleri and its …
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
N Bejerman, P Roumagnac… - Frontiers in Microbiology, 2020 - frontiersin.org
Alfalfa (Medicago sativa L.), also known as lucerne, is a major forage crop worldwide. In the
United States, it has recently become the third most valuable field crop, with an estimated …
United States, it has recently become the third most valuable field crop, with an estimated …
Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya
Background Maize lethal necrosis is caused by a synergistic co-infection of Maize chlorotic
mottle virus (MCMV) and a specific member of the Potyviridae, such as Sugarcane mosaic …
mottle virus (MCMV) and a specific member of the Potyviridae, such as Sugarcane mosaic …
Gene regulatory network and its constituent transcription factors that control nitrogen‐deficiency responses in rice
Increase in the nitrogen (N)‐use efficiency and optimization of N response in crop species
are urgently needed. Although transcription factor‐based genetic engineering is a promising …
are urgently needed. Although transcription factor‐based genetic engineering is a promising …
RNA-Seq reveals virus–virus and virus–plant interactions in nature
As research on plant viruses has focused mainly on crop diseases, little is known about
these viruses in natural environments. To understand the ecology of viruses in natural …
these viruses in natural environments. To understand the ecology of viruses in natural …
High-yielding rice Takanari has superior photosynthetic response to a commercial rice Koshihikari under fluctuating light
Leaves within crop canopies experience variable light over the course of a day, which
greatly affects photosynthesis and crop productivity. Little is known about the mechanisms of …
greatly affects photosynthesis and crop productivity. Little is known about the mechanisms of …
Targeted genome sequencing (TG-Seq) approaches to detect plant viruses
S Maina, L Zheng, BC Rodoni - Viruses, 2021 - mdpi.com
Globally, high-throughput sequencing (HTS) has been used for virus detection in germplasm
certification programs. However, sequencing costs have impeded its implementation as a …
certification programs. However, sequencing costs have impeded its implementation as a …
Virome analysis of potyvirus populations infecting saffron in Iran: the discovery of a novel potyvirus
Saffron (Crocus sativus L.) is one of the world's most expensive medicinal and aromatic
plants, which is extensively grown in Iran. Viral diseases are important causes of serious …
plants, which is extensively grown in Iran. Viral diseases are important causes of serious …
Design, execution, and interpretation of plant RNA-seq analyses
Genomics has transformed our understanding of the genetic architecture of traits and the
genetic variation present in plants. Here, we present a review of how RNA-seq can be …
genetic variation present in plants. Here, we present a review of how RNA-seq can be …
Identification and Characterization of a Garlic Virus E Genome in Garlic (Allium sativum L.) Using High-Throughput Sequencing from India
Garlic (Allium sativum L.) plants exhibiting mosaics, deformation, and yellow stripes
symptoms were identified in Meerut City, Uttar Pradesh, India. To investigate the viruses in …
symptoms were identified in Meerut City, Uttar Pradesh, India. To investigate the viruses in …