A comparison of marker gene selection methods for single-cell RNA sequencing data

JM Pullin, DJ McCarthy - Genome Biology, 2024 - Springer
Background The development of single-cell RNA sequencing (scRNA-seq) has enabled
scientists to catalog and probe the transcriptional heterogeneity of individual cells in …

Single-cell RNA sequencing reveals dysregulation of spinal cord cell types in a severe spinal muscular atrophy mouse model

J Sun, J Qiu, Q Yang, Q Ju, R Qu, X Wang, L Wu… - PLoS …, 2022 - journals.plos.org
Although spinal muscular atrophy (SMA) is a motor neuron disease caused by the loss of
survival of motor neuron (SMN) proteins, there is growing evidence that non-neuronal cells …

Modes of genetic adaptations underlying functional innovations in the rumen

X Pan, Y Cai, Z Li, X Chen, R Heller, N Wang… - Science China Life …, 2021 - Springer
The rumen is the hallmark organ of ruminants and hosts a diverse ecosystem of
microorganisms that facilitates efficient digestion of plant fibers. We analyzed 897 …

SSRE: cell type detection based on sparse subspace representation and similarity enhancement

Z Liang, M Li, R Zheng, Y Tian, X Yan… - Genomics …, 2021 - academic.oup.com
Accurate identification of cell types from single-cell RNA sequencing (scRNA-seq) data
plays a critical role in a variety of scRNA-seq analysis studies. This task corresponds to …

Feature selection for high dimensional data using supervised machine learning techniques

K Lazaros, S Tasoulis, A Vrahatis… - … Conference on Big …, 2022 - ieeexplore.ieee.org
In recent years, feature selection has become an increasingly active field of data science
and machine learning research. Most of the datasets that are being used nowadays for …

KGLRR: A low-rank representation K-means with graph regularization constraint method for Single-cell type identification

LP Wang, JX Liu, JL Shang, XZ Kong, BX Guan… - … Biology and Chemistry, 2023 - Elsevier
Single-cell RNA sequencing technology provides a tremendous opportunity for studying
disease mechanisms at the single-cell level. Cell type identification is a key step in the …

Hierarchical marker genes selection in scRNA-seq analysis

Y Sun, P Qiu - PLOS Computational Biology, 2024 - journals.plos.org
When analyzing scRNA-seq data containing heterogeneous cell populations, an important
task is to select informative marker genes to distinguish various cell clusters and annotate …

Feature Selection in single-cell RNA-seq data via a Genetic Algorithm

KI Chatzilygeroudis, AG Vrahatis, SK Tasoulis… - Learning and Intelligent …, 2021 - Springer
Big data methods prevail in the biomedical domain leading to effective and scalable data-
driven approaches. Biomedical data are known for their ultra-high dimensionality, especially …

MLG: multilayer graph clustering for multi-condition scRNA-seq data

S Lu, DJ Conn, S Chen, KD Johnson… - Nucleic Acids …, 2021 - academic.oup.com
Single-cell transcriptome sequencing (scRNA-seq) enabled investigations of cellular
heterogeneity at exceedingly higher resolutions. Identification of novel cell types or transient …

Finding Group Gene Biomarkers by improved LRP algoirthm and Intersection Selection Idea

F Zheng, J Qing, Z Yuan, Y Li, Y Li, Y Geng, J Zhao… - 2024 - researchsquare.com
Gene Biomarkers is valuable to the medical mechanism and drug targets. But it is very hard
to find the accurate biomarkers. The traditional bioinfomatical methods and machine …