Splicing and transcription touch base: co-transcriptional spliceosome assembly and function

L Herzel, DSM Ottoz, T Alpert… - Nature reviews Molecular …, 2017 - nature.com
Several macromolecular machines collaborate to produce eukaryotic messenger RNA. RNA
polymerase II (Pol II) translocates along genes that are up to millions of base pairs in length …

Mechanisms and regulation of alternative pre-mRNA splicing

Y Lee, DC Rio - Annual review of biochemistry, 2015 - annualreviews.org
Precursor messenger RNA (pre-mRNA) splicing is a critical step in the posttranscriptional
regulation of gene expression, providing significant expansion of the functional proteome of …

Coupling mRNA processing with transcription in time and space

DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …

Nascent RNA analyses: tracking transcription and its regulation

EM Wissink, A Vihervaara, ND Tippens… - Nature Reviews …, 2019 - nature.com
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …

RNA editing: Expanding the potential of RNA therapeutics

BJ Booth, S Nourreddine, D Katrekar, Y Savva, D Bose… - Molecular Therapy, 2023 - cell.com
RNA therapeutics have had a tremendous impact on medicine, recently exemplified by the
rapid development and deployment of mRNA vaccines to combat the COVID-19 pandemic …

RADAR: a rigorously annotated database of A-to-I RNA editing

G Ramaswami, JB Li - Nucleic acids research, 2014 - academic.oup.com
We present RADAR—a rigorously annotated database of A-to-I RNA editing (available at
http://RNAedit. com). The identification of A-to-I RNA editing sites has been dramatically …

A critical analysis of codon optimization in human therapeutics

VP Mauro, SA Chappell - Trends in molecular medicine, 2014 - cell.com
Codon optimization describes gene engineering approaches that use synonymous codon
changes to increase protein production. Applications for codon optimization include …

Profiling RNA editing in human tissues: towards the inosinome Atlas

E Picardi, C Manzari, F Mastropasqua, I Aiello… - Scientific reports, 2015 - nature.com
Adenine to Inosine RNA editing is a widespread co-and post-transcriptional mechanism
mediated by ADAR enzymes acting on double stranded RNA. It has a plethora of biological …

[HTML][HTML] TRIBE: hijacking an RNA-editing enzyme to identify cell-specific targets of RNA-binding proteins

AC McMahon, R Rahman, H Jin, JL Shen, A Fieldsend… - Cell, 2016 - cell.com
RNA transcripts are bound and regulated by RNA-binding proteins (RBPs). Current methods
for identifying in vivo targets of an RBP are imperfect and not amenable to examining small …

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation

JS Menet, J Rodriguez, KC Abruzzi, M Rosbash - elife, 2012 - elifesciences.org
A substantial fraction of the metazoan transcriptome undergoes circadian oscillations in
many cells and tissues. Based on the transcription feedback loops important for circadian …