Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity

AH Harrill, I Rusyn - Expert opinion on drug metabolism & …, 2008 - Taylor & Francis
Extensive growth in the field of molecular biology in recent decades has led to the
development of new and powerful experimental and computational tools that enable the …

An organizational approach for the assessment of DNA adduct data in risk assessment: case studies for aflatoxin B1, tamoxifen and vinyl chloride

LH Pottenger, LS Andrews, AN Bachman… - Critical reviews in …, 2014 - Taylor & Francis
The framework analysis previously presented for using DNA adduct information in the risk
assessment of chemical carcinogens was applied in a series of case studies which place the …

Discrimination for genotoxic and nongenotoxic carcinogens by gene expression profiling in primary mouse hepatocytes improves with exposure time

K Mathijs, KJJ Brauers, DGJ Jennen… - Toxicological …, 2009 - academic.oup.com
Assessing the potential carcinogenicity of chemicals for humans represents an ongoing
challenge. Chronic rodent bioassays predict human cancer risk at only limited reliability and …

Identification of molecular signatures predicting the carcinogenicity of polycyclic aromatic hydrocarbons (PAHs)

MK Song, M Song, HS Choi, YJ Kim, YK Park, JC Ryu - Toxicology letters, 2012 - Elsevier
Assessing the potential carcinogenicity of human toxins represents an ongoing challenge.
Chronic rodent bioassays predict human cancer risk with limited reliability, and are …

An integrated genomic approach identifies HOXC8 as an upstream regulator in ovarian endometrioma

Y Mihara, R Maekawa, S Sato, N Shimizu… - The Journal of …, 2020 - academic.oup.com
Purpose To identify the upstream regulators (URs) involved in the onset and pathogenesis
of ovarian endometrioma. Methods Recently, a method called Significance-based Modules …

Linking coregulated gene modules with polycyclic aromatic hydrocarbon-related cancer risk in the 3D human bronchial epithelium

Y Chang, JE Rager, SC Tilton - Chemical research in toxicology, 2021 - ACS Publications
Exposure to polycyclic aromatic hydrocarbons (PAHs) often occurs as complex chemical
mixtures, which are linked to numerous adverse health outcomes in humans, with cancer as …

Characteristic molecular signature for the early detection and prediction of polycyclic aromatic hydrocarbons in rat liver

KH Jung, JK Kim, JH Noh, JW Eun, HJ Bae, MG Kim… - Toxicology letters, 2013 - Elsevier
Predictions of toxicity are central for the assessment of chemical toxicity, and the effects of
environmental toxic compounds are still a major issue for predicting potential human health …

Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes

W Shi, M Bessarabova, D Dosymbekov… - The …, 2010 - nature.com
Gene expression signatures of toxicity and clinical response benefit both safety assessment
and clinical practice; however, difficulties in connecting signature genes with the predicted …

Knock down of Caenorhabditis elegans cutc-1 Exacerbates the Sensitivity Toward High Levels of Copper

S Calafato, S Swain, S Hughes, P Kille… - Toxicological …, 2008 - academic.oup.com
Copper, though toxic in excess, is an essential trace element that serves as a cofactor in
many critical biological processes such as respiration, iron transport, and oxidative stress …

Gene expression profiling in primary mouse hepatocytes discriminates true from false-positive genotoxic compounds

K Mathijs, KJJ Brauers, DGJ Jennen, D Lizarraga… - …, 2010 - academic.oup.com
Well-established in vitro methods for testing the genotoxic potency of chemicals—such as
the Ames/Salmonella test, the mouse lymphoma assay, the micronucleus test and the …