[HTML][HTML] Clinical information extraction applications: a literature review

Y Wang, L Wang, M Rastegar-Mojarad, S Moon… - Journal of biomedical …, 2018 - Elsevier
Background With the rapid adoption of electronic health records (EHRs), it is desirable to
harvest information and knowledge from EHRs to support automated systems at the point of …

[HTML][HTML] Natural language processing of clinical notes on chronic diseases: systematic review

S Sheikhalishahi, R Miotto, JT Dudley… - JMIR medical …, 2019 - medinform.jmir.org
Background: Novel approaches that complement and go beyond evidence-based medicine
are required in the domain of chronic diseases, given the growing incidence of such …

Chapter 11: Genome-wide association studies

WS Bush, JH Moore - PLoS computational biology, 2012 - journals.plos.org
Genome-wide association studies (GWAS) have evolved over the last ten years into a
powerful tool for investigating the genetic architecture of human disease. In this work, we …

Next-generation phenotyping of electronic health records

G Hripcsak, DJ Albers - Journal of the American Medical …, 2013 - academic.oup.com
The national adoption of electronic health records (EHR) promises to make an
unprecedented amount of data available for clinical research, but the data are complex …

Automated machine learning for healthcare and clinical notes analysis

A Mustafa, M Rahimi Azghadi - Computers, 2021 - mdpi.com
Machine learning (ML) has been slowly entering every aspect of our lives and its positive
impact has been astonishing. To accelerate embedding ML in more applications and …

Clinical natural language processing in languages other than English: opportunities and challenges

A Névéol, H Dalianis, S Velupillai, G Savova… - Journal of biomedical …, 2018 - Springer
Background Natural language processing applied to clinical text or aimed at a clinical
outcome has been thriving in recent years. This paper offers the first broad overview of …

Unravelling the human genome–phenome relationship using phenome-wide association studies

WS Bush, MT Oetjens, DC Crawford - Nature Reviews Genetics, 2016 - nature.com
Advances in genotyping technology have, over the past decade, enabled the focused
search for common genetic variation associated with human diseases and traits. With the …

Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network

KM Newton, PL Peissig, AN Kho… - Journal of the …, 2013 - academic.oup.com
Background Genetic studies require precise phenotype definitions, but electronic medical
record (EMR) phenotype data are recorded inconsistently and in a variety of formats …

[HTML][HTML] Clinical data reuse or secondary use: current status and potential future progress

SM Meystre, C Lovis, T Bürkle… - Yearbook of medical …, 2017 - thieme-connect.com
Objective: To perform a review of recent research in clinical data reuse or secondary use,
and envision future advances in this field. Methods: The review is based on a large literature …

Natural language processing for EHR-based computational phenotyping

Z Zeng, Y Deng, X Li, T Naumann… - IEEE/ACM transactions …, 2018 - ieeexplore.ieee.org
This article reviews recent advances in applying natural language processing (NLP) to
Electronic Health Records (EHRs) for computational phenotyping. NLP-based …