Phenotype‐driven approaches to enhance variant prioritization and diagnosis of rare disease

JOB Jacobsen, C Kelly, V Cipriani… - Human …, 2022 - Wiley Online Library
Rare disease diagnostics and disease gene discovery have been revolutionized by whole‐
exome and genome sequencing but identifying the causative variant (s) from the millions in …

The human phenotype ontology in 2021

S Köhler, M Gargano, N Matentzoglu… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Human Phenotype Ontology (HPO, https://hpo. jax. org) was launched in 2008
to provide a comprehensive logical standard to describe and computationally analyze …

Advances in the diagnosis of inherited neuromuscular diseases and implications for therapy development

R Thompson, S Spendiff, A Roos, PR Bourque… - The Lancet …, 2020 - thelancet.com
Advances in DNA sequencing technologies have resulted in a near doubling, in under 10
years, of the number of causal genes identified for inherited neuromuscular disorders …

Diagnostic yield and clinical utility of whole exome sequencing using an automated variant prioritization system, EVIDENCE

GH Seo, T Kim, IH Choi, J Park, J Lee, S Kim… - Clinical …, 2020 - Wiley Online Library
EVIDENCE, an automated variant prioritization system, has been developed to facilitate
whole exome sequencing analyses. This study investigated the diagnostic yield of …

[HTML][HTML] Solving patients with rare diseases through programmatic reanalysis of genome-phenome data

L Matalonga, C Hernández-Ferrer, D Piscia… - European Journal of …, 2021 - nature.com
Reanalysis of inconclusive exome/genome sequencing data increases the diagnosis yield
of patients with rare diseases. However, the cost and efforts required for reanalysis prevent …

[HTML][HTML] Ontologizing health systems data at scale: making translational discovery a reality

TJ Callahan, AL Stefanski, JM Wyrwa, C Zeng… - NPJ Digital …, 2023 - nature.com
Common data models solve many challenges of standardizing electronic health record
(EHR) data but are unable to semantically integrate all of the resources needed for deep …

Systematic use of phenotype evidence in clinical genetic testing reduces the frequency of variants of uncertain significance

B Johnson, K Ouyang, L Frank, R Truty… - American Journal of …, 2022 - Wiley Online Library
Guidelines for variant interpretation include criteria for incorporating phenotype evidence,
but this evidence is inconsistently applied. Systematic approaches to using phenotype …

Neuromuscular disorders: finding the missing genetic diagnoses

KE Koczwara, NJ Lake, AM DeSimone, M Lek - Trends in Genetics, 2022 - cell.com
Neuromuscular disorders (NMDs) are a wide-ranging group of diseases that seriously affect
the quality of life of affected individuals. The development of next-generation sequencing …

[HTML][HTML] Added value of reanalysis of whole exome-and whole genome sequencing data from patients suspected of primary immune deficiency using an extended …

SB Mørup, L Nazaryan-Petersen, M Gabrielaite… - Frontiers in …, 2022 - frontiersin.org
Background Knowledge of the genetic variation underlying Primary Immune Deficiency
(PID) is increasing. Reanalysis of genome-wide sequencing data from undiagnosed patients …

[HTML][HTML] Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes

I Núñez-Carpintero, M Rigau, M Bosio… - Nature …, 2024 - nature.com
Exploring the molecular basis of disease severity in rare disease scenarios is a challenging
task provided the limitations on data availability. Causative genes have been described for …