Fundamental aspects of protein− protein association kinetics

G Schreiber, G Haran, HX Zhou - Chemical reviews, 2009 - ACS Publications
The structure of a protein complex together with information about its affinity and other
thermodynamic characteristics provide a “frozen” view of the complex. This picture ignores …

Transient protein–protein interactions

SE Acuner Ozbabacan, HB Engin… - … , Design & Selection, 2011 - academic.oup.com
Transient complexes are crucial for diverse biological processes such as biochemical
pathways and signaling cascades in the cell. Here, we give an overview of the transient …

Complete protein–protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling

N Plattner, S Doerr, G De Fabritiis, F Noé - Nature chemistry, 2017 - nature.com
Protein–protein association is fundamental to many life processes. However, a microscopic
model describing the structures and kinetics during association and dissociation is lacking …

Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation

NB Nillegoda, J Kirstein, A Szlachcic, M Berynskyy… - Nature, 2015 - nature.com
Protein aggregates are the hallmark of stressed and ageing cells, and characterize several
pathophysiological states,. Healthy metazoan cells effectively eliminate intracellular protein …

[HTML][HTML] Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

SR McGuffee, AH Elcock - PLoS computational biology, 2010 - journals.plos.org
A longstanding question in molecular biology is the extent to which the behavior of
macromolecules observed in vitro accurately reflects their behavior in vivo. A number of …

[HTML][HTML] Thermodynamics and kinetics of actin filament nucleation

D Sept, JA McCammon - Biophysical journal, 2001 - cell.com
We have performed computer simulations and free energy calculations to determine the
thermodynamics and kinetics of actin nucleation and thus identify a probable nucleation …

Models of macromolecular crowding effects and the need for quantitative comparisons with experiment

AH Elcock - Current opinion in structural biology, 2010 - Elsevier
In recent years significant effort has been devoted to exploring the potential effects of
macromolecular crowding on protein folding and association phenomena. Theoretical …

Unbinding forces of single antibody-antigen complexes correlate with their thermal dissociation rates

F Schwesinger, R Ros, T Strunz… - Proceedings of the …, 2000 - National Acad Sciences
Point mutants of three unrelated antifluorescein antibodies were constructed to obtain nine
different single-chain Fv fragments, whose on-rates, off-rates, and equilibrium binding …

Rational design of faster associating and tighter binding protein complexes

T Selzer, S Albeck, G Schreiber - Nature structural biology, 2000 - nature.com
A protein design strategy was developed to specifically enhance the rate of association (k
on) between a pair of proteins without affecting the rate of dissociation (k off). The method is …

Ligand-receptor interactions

P Bongrand - Reports on progress in Physics, 1999 - iopscience.iop.org
The formation and dissociation of specific noncovalent interactions between a variety of
macromolecules play a crucial role in the function of biological systems. During the last few …