RNA Chaperones and the RNA Folding Problem (∗)

D Herschlag - Journal of Biological Chemistry, 1995 - ASBMB
Functional and structural inter-relationships of RNA and proteins in the execution and
control of biological processes such as RNA processing, RNA splicing, and translation are …

Nucleic-acid therapeutics: basic principles and recent applications

JB Opalinska, AM Gewirtz - Nature Reviews Drug Discovery, 2002 - nature.com
The sequencing of the human genome and the elucidation of many molecular pathways that
are important in disease have provided unprecedented opportunities for the development of …

How to measure and evaluate binding affinities

I Jarmoskaite, I AlSadhan, PP Vaidyanathan… - Elife, 2020 - elifesciences.org
Quantitative measurements of biomolecule associations are central to biological
understanding and are needed to build and test predictive and mechanistic models. Given …

Three-dimensional structure of a hammerhead ribozyme

HW Pley, KM Flaherty, DB McKay - Nature, 1994 - nature.com
The hammerhead ribozyme is a small catalytic RNA motif made up of three base-paired
stems and a core of highly conserved, non-complementary nucleotides essential for …

Mechanism and utility of an RNA-cleaving DNA enzyme

SW Santoro, GF Joyce - Biochemistry, 1998 - ACS Publications
We previously reported the in vitro selection of a general-purpose RNA-cleaving DNA
enzyme that exhibits a catalytic efficiency (k cat/KM) exceeding that of any other known …

A DNA enzyme with Mg2+-dependent RNA phosphoesterase activity

RR Breaker, GF Joyce - Chemistry & biology, 1995 - cell.com
Background: Previously we demonstrated that DNA can act as an enzyme in the Pb 2t-
dependent cleavage of an RNA phosphoester. This is a facile reaction, with an uncatalyzed …

RNA catalysis through compartmentalization

CA Strulson, RC Molden, CD Keating… - Nature chemistry, 2012 - nature.com
RNA performs important cellular functions in contemporary life forms. Its ability to act both as
a catalyst and a storage mechanism for genetic information is also an important part of the …

Ribozyme structures and mechanisms

EA Doherty, JA Doudna - Annual review of biochemistry, 2000 - annualreviews.org
▪ Abstract The past few years have seen exciting advances in understanding the structure
and function of catalytic RNA. Crystal structures of several ribozymes have provided detailed …

On the role of magnesium ions in RNA stability

VK Misra, DE Draper - Biopolymers: Original Research on …, 1998 - Wiley Online Library
Divalent cations, like magnesium, are crucial for the structural integrity and biological activity
of RNA. In this article, we present a picture of how magnesium stabilizes a particular folded …

The structure, function and application of the hammerhead ribozyme

KR Birikh, PA Heaton, F Eckstein - European Journal of …, 1997 - Wiley Online Library
The hammerhead ribozyme is one of the smallest ribozymes known and catalyses the site‐
specific hydrolysis of a phosphodiester bond. This small ribozyme is of interest for two …