Functional Annotation of Animal Genomes (FAANG): current achievements and roadmap
Functional annotation of genomes is a prerequisite for contemporary basic and applied
genomic research, yet farmed animal genomics is deficient in such annotation. To address …
genomic research, yet farmed animal genomics is deficient in such annotation. To address …
Rfam 12.0: updates to the RNA families database
The Rfam database (available at http://rfam. xfam. org) is a collection of non-coding RNA
families represented by manually curated sequence alignments, consensus secondary …
families represented by manually curated sequence alignments, consensus secondary …
The identification and functional annotation of RNA structures conserved in vertebrates
SE Seemann, AH Mirza, C Hansen… - Genome …, 2017 - genome.cshlp.org
Structured elements of RNA molecules are essential in, eg, RNA stabilization, localization,
and protein interaction, and their conservation across species suggests a common …
and protein interaction, and their conservation across species suggests a common …
The porcine translational research database: a manually curated, genomics and proteomics-based research resource
Background The use of swine in biomedical research has increased dramatically in the last
decade. Diverse genomic-and proteomic databases have been developed to facilitate …
decade. Diverse genomic-and proteomic databases have been developed to facilitate …
The role of microRNAs in equine medicine: a review
JH van der Kolk, A Pacholewska, V Gerber - Veterinary Quarterly, 2015 - Taylor & Francis
The search for new markers of diseases in human as well as veterinary medicine is ongoing.
Recently, microRNAs (miRNAs or miRs) have emerged as potential new biomarkers …
Recently, microRNAs (miRNAs or miRs) have emerged as potential new biomarkers …
BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access
AS Geissler, C Anthon, F Alkan… - Microbial …, 2021 - microbiologyresearch.org
A large part of our current understanding of gene regulation in Gram-positive bacteria is
based on Bacillus subtilis, as it is one of the most well studied bacterial model systems. The …
based on Bacillus subtilis, as it is one of the most well studied bacterial model systems. The …
Structural variant detection by large-scale sequencing reveals new evolutionary evidence on breed divergence between Chinese and European pigs
P Zhao, J Li, H Kang, H Wang, Z Fan, Z Yin, J Wang… - Scientific Reports, 2016 - nature.com
In this study, we performed a genome-wide SV detection among the genomes of thirteen
pigs from diverse Chinese and European originated breeds by next genetation sequencing …
pigs from diverse Chinese and European originated breeds by next genetation sequencing …
Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates
The number of discovered natural miRNA sponges in plants, viruses, and mammals is
increasing steadily. Some sponges like ciRS-7 for miR-7 contain multiple nearby miRNA …
increasing steadily. Some sponges like ciRS-7 for miR-7 contain multiple nearby miRNA …
Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome
C Robert, R Kapetanovic, D Beraldi, M Watson… - BMC genomics, 2015 - Springer
Background The FANTOM5 consortium used Cap Analysis of Gene Expression (CAGE) tag
sequencing to produce a comprehensive atlas of promoters and enhancers within the …
sequencing to produce a comprehensive atlas of promoters and enhancers within the …
Distribution of miRNA genes in the pig genome
P Paczynska, A Grzemski, M Szydlowski - BMC genetics, 2015 - Springer
Background Recent completion of swine genome may simplify the production of swine as a
large biomedical model. Here we studied sequence and location of known swine miRNA …
large biomedical model. Here we studied sequence and location of known swine miRNA …