Functional analysis of structural variants in single cells using Strand-seq

H Jeong, K Grimes, KK Rauwolf, PM Bruch… - Nature …, 2023 - nature.com
Somatic structural variants (SVs) are widespread in cancer, but their impact on disease
evolution is understudied due to a lack of methods to directly characterize their functional …

LncRNAs in adaptive immunity: role in physiological and pathological conditions

PF Zeni, M Mraz - RNA biology, 2021 - Taylor & Francis
The adaptive immune system is responsible for generating immunological response and
immunological memory. Regulation of adaptive immunity including B cell and T cell biology …

Accumulation of cytoplasmic DNA due to ATM deficiency activates the microglial viral response system with neurotoxic consequences

X Song, F Ma, K Herrup - Journal of Neuroscience, 2019 - Soc Neuroscience
ATM (ataxia-telangiectasia mutated) is a PI3K-like kinase best known for its role in the DNA
damage response (DDR), especially after double-strand breaks. Mutations in the ATM gene …

Preferentially expressed antigen in melanoma (PRAME) and the PRAME family of leucine-rich repeat proteins

N Hermes, S Kewitz, MS Staege - Current cancer drug targets, 2016 - ingentaconnect.com
Preferentially expressed antigen in melanoma (PRAME) is the best characterized member of
the PRAME family of leucine-rich repeat (LRR) proteins. Mammalian genomes contain …

Adult high-grade B-cell lymphoma with Burkitt lymphoma signature: genomic features and potential therapeutic targets

A Bouska, C Bi, W Lone, W Zhang… - Blood, The Journal …, 2017 - ashpublications.org
The adult high-grade B-cell lymphomas sharing molecular features with Burkitt lymphoma
(BL) are highly aggressive lymphomas with poor clinical outcome. High-resolution structural …

PRAME Gene Copy Number Variation Is Related to Its Expression in Multiple Myeloma

L Yang, YZ Wang, HH Zhu, Y Chang, LD Li… - DNA and cell …, 2017 - liebertpub.com
Multiple myeloma (MM) patients commonly present abnormal expression of cancer–testis
antigens, which may serve as immunotherapeutic targets and prognostic factors. We …

Identification of recurrent noncoding mutations in B-cell lymphoma using capture Hi-C

AJ Cornish, PH Hoang, SE Dobbins, PJ Law… - Blood …, 2019 - ashpublications.org
The identification of driver mutations is fundamental to understanding oncogenesis.
Although genes frequently mutated in B-cell lymphoma have been identified, the search for …

Identification of prognostic relevant chromosomal abnormalities in chronic lymphocytic leukemia using microarray-based genomic profiling

MJPL Stevens-Kroef, E Van den Berg… - Molecular …, 2014 - Springer
Background Characteristic genomic abnormalities in patients with B cell chronic lymphocytic
leukemia (CLL) have been shown to provide important prognostic information. Fluorescence …

The role of noncoding RNAs in B-cell lymphoma

J Li, J Zou, X Wan, C Sun, F Peng, Z Chu… - Frontiers in oncology, 2020 - frontiersin.org
In recent years, emerging evidence has suggested that noncoding RNAs (ncRNAs)
participate in nearly every aspect of biological processes and play a crucial role in the …

Impact of gene mutations and chromosomal aberrations on progression-free survival in chronic lymphocytic leukemia patients treated with front-line …

M Spunarova, N Tom, S Pavlova, M Mraz, Y Brychtova… - Leukemia research, 2019 - Elsevier
The impact of genetic aberrations on rituximab-based therapeutic regimens has been
intensely studied in chronic lymphocytic leukemia (CLL). According to the current consensus …