Global challenges facing plant pathology: multidisciplinary approaches to meet the food security and environmental challenges in the mid-twenty-first century

M Jeger, R Beresford, C Bock, N Brown, A Fox… - CABI Agriculture and …, 2021 - Springer
The discipline of plant pathology has an expanding remit requiring a multi-faceted,
interdisciplinary approach to capture the complexity of interactions for any given disease …

A primer on the analysis of high-throughput sequencing data for detection of plant viruses

D Kutnjak, L Tamisier, I Adams, N Boonham… - Microorganisms, 2021 - mdpi.com
High-throughput sequencing (HTS) technologies have become indispensable tools
assisting plant virus diagnostics and research thanks to their ability to detect any plant virus …

Integrating High throughput Sequencing into Survey Design Reveals Turnip Yellows Virus and Soybean Dwarf Virus in Pea (Pisum Sativum) in the United Kingdom

AR Fowkes, S McGreig, H Pufal, S Duffy, B Howard… - Viruses, 2021 - mdpi.com
There is only limited knowledge of the presence and incidence of viruses in peas within the
United Kingdom, therefore high-throughput sequencing (HTS) in combination with a bulk …

Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis

N Fontdevila Pareta, M Khalili, A Maachi… - Frontiers in …, 2023 - frontiersin.org
The advances in high-throughput sequencing (HTS) technologies and bioinformatic tools
have provided new opportunities for virus and viroid discovery and diagnostics. Hence, new …

[HTML][HTML] Evaluation of sequencing and PCR-based methods for the quantification of the viral genome formula

D Boezen, ML Johnson, AA Grum-Grzhimaylo… - Virus Research, 2023 - Elsevier
Viruses show great diversity in their genome organization. Multipartite viruses package their
genome segments into separate particles, most or all of which are required to initiate …

Evidence that an Unnamed Isometric Virus Associated with Potato Rugose Disease in Peru Is a New Species of Genus Torradovirus

R Alvarez-Quinto, M Amao, G Muller… - …, 2023 - Am Phytopath Society
A previously uncharacterized torradovirus species infecting potatoes was detected by high-
throughput sequencing from field samples from Peru and in customs intercepts in potato …

Historical virus isolate collections: An invaluable resource connecting plant virology's pre‐sequencing and post‐sequencing eras

RAC Jones, N Boonham, IP Adams, A Fox - Plant Pathology, 2021 - Wiley Online Library
Many laboratories maintain historical collections of preserved plant virus isolates that store a
wealth of untapped data, including original type isolates, studied in the pre‐sequencing era …

Diversity and pathobiology of an ilarvirus unexpectedly detected in diverse plants and global sequencing data

MPS Rivarez, C Faure, L Svanella-Dumas… - …, 2023 - Am Phytopath Society
High-throughput sequencing (HTS) and sequence mining tools revolutionized virus
detection and discovery in recent years, and implementing them with classical plant virology …

Biological and genetic characterization of Physostegia chlorotic mottle virus in Europe based on host range, location, and time

C Temple, AG Blouin, K De Jonghe, Y Foucart… - Plant …, 2022 - Am Phytopath Society
Application of high throughput sequencing (HTS) technologies enabled the first identification
of Physostegia chlorotic mottle virus (PhCMoV) in 2018 in Austria. Subsequently, PhCMoV …

Phylogenetics and evolution of potato virus V: Another potyvirus that originated in the Andes

S Fuentes, AJ Gibbs, IP Adams, M Hajizadeh… - Plant …, 2022 - Am Phytopath Society
Potato virus V (PVV) causes a disease of potato (Solanum tubersosum) in South and Central
America, Europe, and the Middle East. We report here the complete genomic sequences of …