MS-DAP platform for downstream data analysis of label-free proteomics uncovers optimal workflows in benchmark data sets and increased sensitivity in analysis of …

F Koopmans, KW Li, RV Klaassen… - Journal of Proteome …, 2022 - ACS Publications
In the rapidly moving proteomics field, a diverse patchwork of data analysis pipelines and
algorithms for data normalization and differential expression analysis is used by the …

protti: an R package for comprehensive data analysis of peptide-and protein-centric bottom-up proteomics data

JP Quast, D Schuster, P Picotti - Bioinformatics Advances, 2022 - academic.oup.com
We present a flexible, user-friendly R package called protti for comprehensive quality
control, analysis and interpretation of quantitative bottom-up proteomics data. protti supports …

Vitamin D status affects proteomic profile of HDL-associated proteins and inflammatory mediators in dyslipidemia

H Mousa, RM Razali, SM Zughaier - The Journal of Nutritional …, 2024 - Elsevier
Vitamin D deficiency and dyslipidemia have substantial implications for human health
globally. Vitamin D is essential for bone metabolism and immune modulation, and its …

From Classical to Modern Computational Approaches to Identify Key Genetic Regulatory Components in Plant Biology

JM Acién, E Cañizares, H Candela… - International Journal of …, 2023 - mdpi.com
The selection of plant genotypes with improved productivity and tolerance to environmental
constraints has always been a major concern in plant breeding. Classical approaches …

Mutant huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure

P Lisowski, S Lickfett, A Rybak-Wolf… - Nature …, 2024 - nature.com
Expansion of the glutamine tract (poly-Q) in the protein huntingtin (HTT) causes the
neurodegenerative disorder Huntington's disease (HD). Emerging evidence suggests that …

ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics

E Theodorakis, AN Antonakis, I Baltsavia… - Nucleic acids …, 2021 - academic.oup.com
Bottom-up proteomics analyses have been proved over the last years to be a powerful tool
in the characterization of the proteome and are crucial for understanding cellular and …

FlexStat: combinatory differentially expressed protein extraction

S De Silva, A Alli-Shaik, J Gunaratne - Bioinformatics Advances, 2024 - academic.oup.com
Motivation Mass spectrometry-based system proteomics allows identification of dysregulated
protein hubs and associated disease-related features. Obtaining differentially expressed …

[图书][B] Expression and Stability of the Ion Channel CFTR in Inflammatory Lung Disease

JH Wellmerling - 2020 - search.proquest.com
Abstract The Cystic Fibrosis Transmembrane conductance Regulator (CFTR) is an ion
channel primarily studied in the context of epithelial fluid homeostasis in the lung. CFTR is …

Vitamin D Immune Modulatory Effect on the Anti-inflammatory potential of HDL Associated Proteins

H MOUSA - 2023 - qspace.qu.edu.qa
Introduction: Vitamin D deficiency is highly prevalent in Qatar. Vitamin D exerts immune-
modulatory effects leading to reduced inflammation. Therefore, vitamin D deficiency is …