[HTML][HTML] Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review

F Zhang, A Daducci, Y He, S Schiavi, C Seguin… - Neuroimage, 2022 - Elsevier
Diffusion magnetic resonance imaging (dMRI) tractography is an advanced imaging
technique that enables in vivo reconstruction of the brain's white matter connections at …

A review of predictive and contrastive self-supervised learning for medical images

WC Wang, E Ahn, D Feng, J Kim - Machine Intelligence Research, 2023 - Springer
Over the last decade, supervised deep learning on manually annotated big data has been
progressing significantly on computer vision tasks. But, the application of deep learning in …

Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation …

T Xue, F Zhang, C Zhang, Y Chen, Y Song… - Medical image …, 2023 - Elsevier
Diffusion MRI tractography is an advanced imaging technique that enables in vivo mapping
of the brain's white matter connections. White matter parcellation classifies tractography …

One-shot segmentation of novel white matter tracts via extensive data augmentation and adaptive knowledge transfer

W Liu, Z Zhuo, Y Liu, C Ye - Medical Image Analysis, 2023 - Elsevier
The use of convolutional neural networks (CNNs) has allowed accurate white matter (WM)
tract segmentation on diffusion magnetic resonance imaging (dMRI). To train the CNN …

Supwma: consistent and efficient tractography parcellation of superficial white matter with deep learning

T Xue, F Zhang, C Zhang, Y Chen… - 2022 IEEE 19th …, 2022 - ieeexplore.ieee.org
White matter parcellation classifies tractography streamlines into clusters or anatomically
meaningful tracts to enable quantification and visualization. Most parcellation methods focus …

[HTML][HTML] FIESTA: Autoencoders for accurate fiber segmentation in tractography

F Dumais, JH Legarreta, C Lemaire, P Poulin… - NeuroImage, 2023 - Elsevier
White matter bundle segmentation is a cornerstone of modern tractography to study the
brain's structural connectivity in domains such as neurological disorders, neurosurgery, and …

[HTML][HTML] Deep fiber clustering: anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation

Y Chen, C Zhang, T Xue, Y Song, N Makris, Y Rathi… - NeuroImage, 2023 - Elsevier
White matter fiber clustering is an important strategy for white matter parcellation, which
enables quantitative analysis of brain connections in health and disease. In combination …

Computational approaches for the reconstruction of optic nerve fibers along the visual pathway from medical images: a comprehensive review

R Jin, Y Cai, S Zhang, T Yang, H Feng… - Frontiers in …, 2023 - frontiersin.org
Optic never fibers in the visual pathway play significant roles in vision formation. Damages of
optic nerve fibers are biomarkers for the diagnosis of various ophthalmological and …

[HTML][HTML] Superficial white matter bundle atlas based on hierarchical fiber clustering over probabilistic tractography data

C Román, C Hernández, M Figueroa, J Houenou… - NeuroImage, 2022 - Elsevier
The study of short association fibers is still an incomplete task due to their higher inter-
subject variability and the smaller size of this kind of fibers in comparison to known long …

TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance

Y Chen, LR Zekelman, C Zhang, T Xue, Y Song… - Medical Image …, 2024 - Elsevier
We propose a geometric deep-learning-based framework, TractGeoNet, for performing
regression using diffusion magnetic resonance imaging (dMRI) tractography and associated …