Chiral induced spin selectivity

BP Bloom, Y Paltiel, R Naaman, DH Waldeck - Chemical Reviews, 2024 - ACS Publications
Since the initial landmark study on the chiral induced spin selectivity (CISS) effect in 1999,
considerable experimental and theoretical efforts have been made to understand the …

The ensemble nature of allostery

HN Motlagh, JO Wrabl, J Li, VJ Hilser - Nature, 2014 - nature.com
Allostery is the process by which biological macromolecules (mostly proteins) transmit the
effect of binding at one site to another, often distal, functional site, allowing for regulation of …

DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

W Lu, J Zhang, W Huang, Z Zhang, X Jia… - Nature …, 2024 - nature.com
While significant advances have been made in predicting static protein structures, the
inherent dynamics of proteins, modulated by ligands, are crucial for understanding protein …

Revealing enzyme functional architecture via high-throughput microfluidic enzyme kinetics

CJ Markin, DA Mokhtari, F Sunden, MJ Appel, E Akiva… - Science, 2021 - science.org
INTRODUCTION Enzymes possess extraordinary catalytic proficiency and specificity. These
properties ultimately derive from interactions not just between the active-site residues and …

Allostery in its many disguises: from theory to applications

SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky… - Structure, 2019 - cell.com
Allosteric regulation plays an important role in many biological processes, such as signal
transduction, transcriptional regulation, and metabolism. Allostery is rooted in the …

[HTML][HTML] Allostery in disease and in drug discovery

R Nussinov, CJ Tsai - Cell, 2013 - cell.com
Allostery is largely associated with conformational and functional transitions in individual
proteins. This concept can be extended to consider the impact of conformational …

Protein allostery and conformational dynamics

J Guo, HX Zhou - Chemical reviews, 2016 - ACS Publications
The functions of many proteins are regulated through allostery, whereby effector binding at a
distal site changes the functional activity (eg, substrate binding affinity or catalytic efficiency) …

Protein ensembles: how does nature harness thermodynamic fluctuations for life? The diverse functional roles of conformational ensembles in the cell

G Wei, W Xi, R Nussinov, B Ma - Chemical reviews, 2016 - ACS Publications
All soluble proteins populate conformational ensembles that together constitute the native
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …

Structure, dynamics, assembly, and evolution of protein complexes

JA Marsh, SA Teichmann - Annual review of biochemistry, 2015 - annualreviews.org
The assembly of individual proteins into functional complexes is fundamental to nearly all
biological processes. In recent decades, many thousands of homomeric and heteromeric …

The role of dynamic conformational ensembles in biomolecular recognition

DD Boehr, R Nussinov, PE Wright - Nature chemical biology, 2009 - nature.com
Molecular recognition is central to all biological processes. For the past 50 years,
Koshland's' induced fit'hypothesis has been the textbook explanation for molecular …