[HTML][HTML] Lemnaceae and Orontiaceae are phylogenetically and morphologically distinct from Araceae

NP Tippery, DH Les, KJ Appenroth, KS Sree… - Plants, 2021 - mdpi.com
Duckweeds comprise a distinctive clade of pleustophytic monocots that traditionally has
been classified as the family Lemnaceae. However, molecular evidence has called into …

[HTML][HTML] CPJSdraw: Analysis and visualization of junction sites of chloroplast genomes

H Li, Q Guo, L Xu, H Gao, L Liu, X Zhou - PeerJ, 2023 - peerj.com
Background Chloroplast genomes are usually circular molecules, and most of them are
tetrad structures with two inverted repeat (IR) regions, a large single-copy region, and a …

IRplus: An augmented tool to detect inverted repeats in plastid genomes

C Díez Menéndez, P Poczai, B Williams… - Genome Biology and …, 2023 - academic.oup.com
High-throughput sequencing methods have increased the accessibility of plastid genomes,
which are crucial for clarifying phylogenetic relationships. Current large sequencing efforts …

[HTML][HTML] Phylogenomic and comparative analyses of Coffeeae alliance (Rubiaceae): deep insights into phylogenetic relationships and plastome evolution

SG Amenu, N Wei, L Wu, O Oyebanji, G Hu, Y Zhou… - BMC Plant …, 2022 - Springer
Background The large and diverse Coffeeae alliance clade of subfamily Ixoroideae
(Rubiaceae) consists of 10 tribes,> 90 genera, and> 2000 species. Previous molecular …

Comparative plastome analysis of Blumea, with implications for genome evolution and phylogeny of Asteroideae

Abdullah, F Mehmood, A Rahim, P Heidari… - Ecology and …, 2021 - Wiley Online Library
Abstract The genus Blumea (Asteroideae, Asteraceae) comprises about 100 species,
including herbs, shrubs, and small trees. Previous studies have been unable to resolve …

[HTML][HTML] Comparative and Phylogenetic Analysis Based on the Chloroplast Genome of Coleanthus subtilis (Tratt.) Seidel, a Protected Rare Species of Monotypic …

J Ren, J Tian, H Jiang, XX Zhu, FM Mutie… - Frontiers in plant …, 2022 - frontiersin.org
Coleanthus subtilis (Tratt.) Seidel (Poaceae) is an ephemeral grass from the monotypic
genus Coleanthus Seidl, which grows on wet muddy areas such as fishponds or reservoirs …

[HTML][HTML] Comparative Analyses of Euonymus Chloroplast Genomes: Genetic Structure, Screening for Loci With Suitable Polymorphism, Positive Selection Genes, and …

Y Li, Y Dong, Y Liu, X Yu, M Yang… - Frontiers in Plant Science, 2021 - frontiersin.org
In this study, we assembled and annotated the chloroplast (cp) genome of the Euonymus
species Euonymus fortunei, Euonymus phellomanus, and Euonymus maackii, and …

[HTML][HTML] The complete chloroplast genome sequencing analysis revealed an unusual IRs reduction in three species of subfamily Zygophylloideae

X Wang, T Dorjee, Y Chen, F Gao, Y Zhou - PLoS One, 2022 - journals.plos.org
Tetraena mongolica, Zygophyllum xanthoxylon, and Z. fabago are three typical dryland
plants with important ecological values in subfamily Zygophylloideae of Zygophyllaceae …

[HTML][HTML] Complete chloroplast genome sequences of three aroideae species (Araceae): lights into selective pressure, marker development and phylogenetic …

B Li, T Liu, A Ali, Y Xiao, N Shan, J Sun, Y Huang… - BMC genomics, 2022 - Springer
Abstract Background Colocasia gigantea, Caladium bicolor and Xanthosoma sagittifolium
are three worldwide famous ornamental and/or vegetable plants in the Araceae family, these …

[HTML][HTML] A large intergenic spacer leads to the increase in genome size and sequential gene movement around IR/SC boundaries in the chloroplast genome of …

X Gu, M Zhu, Y Su, T Wang - International Journal of Molecular Sciences, 2022 - mdpi.com
Expansion and contraction (ebb and flow events) of inverted repeat (IR) boundaries occur
and are generally considered to be major factors affecting chloroplast (cp) genome size …