Fractal dimension of chromatin: potential molecular diagnostic applications for cancer prognosis

K Metze - Expert review of molecular diagnostics, 2013 - Taylor & Francis
Fractal characteristics of chromatin, revealed by light or electron microscopy, have been
reported during the last 20 years. Fractal features can easily be estimated in digitalized …

The fractal dimension of chromatin-a potential molecular marker for carcinogenesis, tumor progression and prognosis

K Metze, R Adam, JB Florindo - Expert review of molecular …, 2019 - Taylor & Francis
Introduction: Fractality is omnipresent in medicine and life sciences. In particular, the fractal
principle is found simultaneously at different organization levels of the cell nucleus. The aim …

Transposable element-mediated rearrangements are prevalent in human genomes

P Balachandran, IA Walawalkar, JI Flores… - Nature …, 2022 - nature.com
Transposable elements constitute about half of human genomes, and their role in
generating human variation through retrotransposition is broadly studied and appreciated …

Comparison of methods for quantification of global DNA methylation in human cells and tissues

S Lisanti, WAW Omar, B Tomaszewski, S De Prins… - PloS one, 2013 - journals.plos.org
DNA methylation is a key epigenetic modification which, in mammals, occurs mainly at CpG
dinucleotides. Most of the CpG methylation in the genome is found in repetitive regions, rich …

The mutational dynamics of short tandem repeats in large, multigenerational families

CJ Steely, WS Watkins, L Baird, LB Jorde - Genome Biology, 2022 - Springer
Abstract Background Short tandem repeats (STRs) compose approximately 3% of the
genome, and mutations at STR loci have been linked to dozens of human diseases …

Do Ty3/gypsy transposable elements play preferential roles in sex chromosome differentiation?

K Srikulnath, SF Ahmad, W Singchat, T Panthum - Life, 2022 - mdpi.com
Transposable elements (TEs) comprise a substantial portion of eukaryotic genomes. They
have the unique ability to integrate into new locations and serve as the main source of …

Epigenetic status of LINE-1 predicts clinical outcome in early-stage rectal cancer

A Benard, CJH van de Velde, L Lessard… - British journal of …, 2013 - nature.com
Background: We evaluated the clinical prognostic value of methylation of two non-coding
repeat sequences, long interspersed element 1 (LINE-1) and Alu, in rectal tumour tissues. In …

Alu distribution and mutation types of cancer genes

W Zhang, A Edwards, W Fan, P Deininger, K Zhang - BMC genomics, 2011 - Springer
Background Alu elements are the most abundant retrotransposable elements comprising~
11% of the human genome. Many studies have highlighted the role that Alu elements have …

[HTML][HTML] Maternal urinary concentrations of bisphenol A during pregnancy are associated with global DNA methylation in cord blood of newborns in the “NELA” birth …

F Navarro-Lafuente, E Adoamnei… - Science of The Total …, 2022 - Elsevier
Endocrine disrupting chemicals (EDCs) set a public health risk through disruption of normal
physiological processes. The toxicoepigenetic mechanisms of developmental exposure to …

The association between global DNA methylation and telomere length in a longitudinal study of boilermakers

JYY Wong, I De Vivo, X Lin, R Grashow… - Genetic …, 2014 - Wiley Online Library
The objectives of this study were to determine if global DNA methylation, as reflected in LINE‐
1 and Alu elements, is associated with telomere length and whether it modifies the rate of …