REDfly: the transcriptional regulatory element database for Drosophila

J Rivera, SVE Keränen, SM Gallo… - Nucleic acids …, 2019 - academic.oup.com
The REDfly database provides a comprehensive curation of experimentally-validated
Drosophila transcriptional cis-regulatory elements and includes information on DNA …

Experimental approaches to investigate biophysical interactions between homeodomain transcription factors and DNA

F Mekkaoui, RA Drewell, JM Dresch… - Biochimica et Biophysica …, 2024 - Elsevier
Homeodomain transcription factors (TFs) bind to specific DNA sequences to regulate the
expression of target genes. Structural work has provided insight into molecular identities and …

Of numbers and movement–understanding transcription factor pathogenesis by advanced microscopy

JMT Auer, JJ Stoddart, I Christodoulou… - Disease models & …, 2020 - journals.biologists.com
Transcription factors (TFs) are life-sustaining and, therefore, the subject of intensive
research. By regulating gene expression, TFs control a plethora of developmental and …

gammaBOriS: identification and taxonomic classification of origins of replication in gammaproteobacteria using Motif-based machine learning

T Sperlea, L Muth, R Martin, C Weigel… - Scientific Reports, 2020 - nature.com
The biology of bacterial cells is, in general, based on information encoded on circular
chromosomes. Regulation of chromosome replication is an essential process that mostly …

γBOriS: identification of origins of replication in gammaproteobacteria using motif-based machine learning

T Sperlea, L Muth, R Martin, C Weigel… - BioRxiv, 2019 - biorxiv.org
The biology of bacterial cells is, in general, based on the information encoded on circular
chromosomes. Regulation of chromosome replication is an essential process which mostly …

[图书][B] Drosophila melanogaster Transcription Factor Binding Affinity Predictions

E Verhagen - 2023 - search.proquest.com
Transcription factors, proteins involved in the process of transcribing DNA into RNA, have
been of particular interest to scientists due to their critical role in gene expression. In this …

Transcription Factor Binding Site Detector Neural Networks Trained with Various DNA Representations

G Pap - 2023 - search.proquest.com
Transcription is one of the most important processes in molecular biology. Transcription
factors are one of the most important component of the transcription machinery. Many …