MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution

G Theißen, R Melzer, F Rümpler - Development, 2016 - journals.biologists.com
The floral quartet model of floral organ specification poses that different tetramers of MIKC-
type MADS-domain transcription factors control gene expression and hence the identity of …

50 years of Arabidopsis research: highlights and future directions

NJ Provart, J Alonso, SM Assmann… - New …, 2016 - Wiley Online Library
The year 2014 marked the 25th International Conference on Arabidopsis Research. In the
50 yr since the first International Conference on Arabidopsis Research, held in 1965 in …

FLOR-ID: an interactive database of flowering-time gene networks in Arabidopsis thaliana

F Bouché, G Lobet, P Tocquin… - Nucleic acids …, 2016 - academic.oup.com
Flowering is a hot topic in Plant Biology and important progress has been made in
Arabidopsis thaliana toward unraveling the genetic networks involved. The increasing …

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

L Hibrand Saint-Oyant, T Ruttink, L Hamama, I Kirov… - Nature plants, 2018 - nature.com
Rose is the world's most important ornamental plant, with economic, cultural and symbolic
value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted …

A spatiotemporal atlas of organogenesis in the development of orchid flowers

C Liu, J Leng, Y Li, T Ge, J Li, Y Chen… - Nucleic Acids …, 2022 - academic.oup.com
Abstract Development of floral organs exhibits complex molecular mechanisms involving the
co-regulation of many genes specialized and precisely functioning in various tissues and …

Architecture of gene regulatory networks controlling flower development in Arabidopsis thaliana

D Chen, W Yan, LY Fu, K Kaufmann - Nature communications, 2018 - nature.com
Floral homeotic transcription factors (TFs) act in a combinatorial manner to specify the organ
identities in the flower. However, the architecture and the function of the gene regulatory …

Genetic architecture of flowering phenology in cereals and opportunities for crop improvement

CB Hill, C Li - Frontiers in plant science, 2016 - frontiersin.org
Cereal crop species including bread wheat (Triticum aestivum L.), barley (Hordeum vulgare
L.), rice (Oryza sativa L.), and maize (Zea mays L.) provide the bulk of human nutrition and …

TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information

SR Kulkarni, D Vaneechoutte… - Nucleic acids …, 2018 - academic.oup.com
A gene regulatory network (GRN) is a collection of regulatory interactions between
transcription factors (TFs) and their target genes. GRNs control different biological processes …

Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators

I De Clercq, J Van de Velde, X Luo, L Liu, V Storme… - Nature Plants, 2021 - nature.com
Gene regulation is a dynamic process in which transcription factors (TFs) play an important
role in controlling spatiotemporal gene expression. To enhance our global understanding of …

Plant Regulomics: a data‐driven interface for retrieving upstream regulators from plant multi‐omics data

X Ran, F Zhao, Y Wang, J Liu, Y Zhuang, L Ye… - The Plant …, 2020 - Wiley Online Library
High‐throughput technology has become a powerful approach for routine plant research.
Interpreting the biological significance of high‐throughput data has largely focused on the …