Practical considerations for plant phylogenomics

MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data

AK Pakkir Shah, A Walter, F Ottosson, F Russo… - Nature protocols, 2024 - nature.com
Feature-based molecular networking (FBMN) is a popular analysis approach for liquid
chromatography–tandem mass spectrometry-based non-targeted metabolomics data. While …

Functional Traits 2.0: The power of the metabolome for ecology

TWN Walker, JM Alexander, PM Allard… - Journal of …, 2022 - Wiley Online Library
A major aim of ecology is to upscale attributes of individuals to understand processes at
population, community and ecosystem scales. Such attributes are typically described using …

The many dimensions of phytochemical diversity: linking theory to practice

WC Wetzel, SR Whitehead - Ecology letters, 2020 - Wiley Online Library
Research on the ecological and evolutionary roles of phytochemicals has recently
progressed from studying single compounds to examining chemical diversity itself. A key …

Tree phytochemical diversity and herbivory are higher in the tropics

L Sun, Y He, M Cao, X Wang, X Zhou, J Yang… - Nature Ecology & …, 2024 - nature.com
A long-standing but poorly tested hypothesis in plant ecology and evolution is that biotic
interactions play a more important role in producing and maintaining species diversity in the …

Chemical similarity of co-occurring trees decreases with precipitation and temperature in North American forests

BE Sedio, MJ Spasojevic, JA Myers… - Frontiers in Ecology …, 2021 - frontiersin.org
Plant diversity varies immensely over large-scale gradients in temperature, precipitation,
and seasonality at global and regional scales. This relationship may be driven in part by …

Contrasting levels of β‐diversity and underlying phylogenetic trends indicate different paths to chemical diversity in highland and lowland willow species

M Volf, JV Leong, P de Lima Ferreira, T Volfová… - Ecology …, 2023 - Wiley Online Library
Diverse specialised metabolites contributed to the success of vascular plants in colonising
most terrestrial habitats. Understanding how distinct aspects of chemical diversity arise …

Abiotic stress rather than biotic interactions drives contrasting trends in chemical richness and variation in alpine willows

M Volf, T Volfová, E Hörandl, ND Wagner… - Functional …, 2022 - Wiley Online Library
Plants produce an astonishing diversity of specialized metabolites as defences against
herbivores, pathogens or detrimental abiotic conditions. Plants growing at different …

Comparative foliar metabolomics of a tropical and a temperate forest community

BE Sedio, JD Parker, SM McMahon, SJ Wright - 2018 - Wiley Online Library
Plant enemies that attack chemically similar host species are thought to mediate competitive
exclusion of chemically similar plants and select for chemical divergence among closely …

Host affinity of endophytic fungi and the potential for reciprocal interactions involving host secondary chemistry

N Christian, BE Sedio, X Florez‐Buitrago… - American Journal of …, 2020 - Wiley Online Library
Premise Interactions between fungal endophytes and their host plants present useful
systems for identifying important factors affecting assembly of host‐associated microbiomes …