Deciphering the spatial landscape and plasticity of immunosuppressive fibroblasts in breast cancer

H Croizer, R Mhaidly, Y Kieffer, G Gentric… - Nature …, 2024 - nature.com
Although heterogeneity of FAP+ Cancer-Associated Fibroblasts (CAF) has been described
in breast cancer, their plasticity and spatial distribution remain poorly understood. Here, we …

Spatial transcriptomics in breast cancer: providing insight into tumor heterogeneity and promoting individualized therapy

J An, Y Lu, Y Chen, Y Chen, Z Zhou, J Chen… - Frontiers in …, 2024 - frontiersin.org
A comprehensive understanding of tumor heterogeneity, tumor microenvironment and the
mechanisms of drug resistance is fundamental to advancing breast cancer research. While …

Single-cell integrative analysis reveals consensus cancer cell states and clinical relevance in breast cancer

L Pang, F Xiang, H Yang, X Shen, M Fang, R Li… - Scientific Data, 2024 - nature.com
High heterogeneity and complex interactions of malignant cells in breast cancer has been
recognized as a driver of cancer progression and therapeutic failure. However, complete …

Case report: Successful treatment of a rare HER2-positive advanced breast squamous cell carcinoma

G Wang, C Yang, D Zeng, J Wang, H Mao… - Frontiers in …, 2024 - frontiersin.org
Background: Breast squamous cell carcinoma (SCC) is an uncommon and highly
aggressive variant of metaplastic breast cancer. Despite its rarity, there is currently no …

STimage-1K4M: A histopathology image-gene expression dataset for spatial transcriptomics

J Chen, M Zhou, W Wu, J Zhang, Y Li, D Li - arXiv preprint arXiv …, 2024 - arxiv.org
Recent advances in multi-modal algorithms have driven and been driven by the increasing
availability of large image-text datasets, leading to significant strides in various fields …

Spatial transcriptomic profiling of human retinoblastoma

L Wang, S Hung, D Urrutia-Cabrera, RCK Kong… - bioRxiv, 2024 - biorxiv.org
Retinoblastoma (RB) represents one of the most prevalent intraocular cancers in children.
Understanding the tumor heterogeneity in RB is important to design better targeted …

Identifying molecular subtypes of breast cancer using single cell RNA-seq data integration and random forest classification

PJIV Paulino, M Sufyan - International Journal of …, 2024 - inderscienceonline.com
Single-cell RNA sequencing (scRNA-seq) has been invaluable in advancing our
understanding of various cancers, including breast cancer. The extensive analysis of scRNA …

173 Spatial transcriptomics analysis reveals association between DDR1-collagen interactions and immune exclusion in human cancers

J Rouse, X Sher, LA Dillon, A Mueller - 2024 - jitc.bmj.com
Background Discoidin domain receptor 1 (DDR1) is overexpressed in many cancers and is
a potential therapeutic target. DDR1 is implicated in immune exclusion and collagen …

Spatial mRNA profiling using Rapid Amplified Multiplexed-FISH (RAM-FISH)

TD Banerjee, J Raine, AS Mathuru, KH Chen… - bioRxiv, 2024 - biorxiv.org
Localizing multiple RNA molecules simultaneously in intact tissues and organs is valuable
for gaining insights into possible gene-regulatory interactions underlying cell differentiation …

Learning phenotype associated signature in spatial transcriptomics with PASSAGE

CK Guo, CR Xia, G Peng, ZJ Cao, G Gao - bioRxiv, 2024 - biorxiv.org
Spatially resolved transcriptomics (SRT) is poised to advance our understanding of cellular
organization within complex tissues under various physiological and pathological conditions …