Multilocus inference of species trees and DNA barcoding

D Mallo, D Posada - … Transactions of the Royal Society B …, 2016 - royalsocietypublishing.org
The unprecedented amount of data resulting from next-generation sequencing has opened
a new era in phylogenetic estimation. Although large datasets should, in theory, increase …

DNA barcoding gap: reliable species identification over morphological and geographical scales

K Čandek, M Kuntner - Molecular ecology resources, 2015 - Wiley Online Library
The philosophical basis and utility of DNA barcoding have been a subject of numerous
debates. While most literature embraces it, some studies continue to question its use in …

The Use of DNA Barcoding in Identification and Conservation of Rosewood (Dalbergia spp.)

I Hartvig, M Czako, ED Kjær, LR Nielsen, I Theilade - PLoS One, 2015 - journals.plos.org
The genus Dalbergia contains many valuable timber species threatened by illegal logging
and deforestation, but knowledge on distributions and threats is often limited and accurate …

Development of Chloroplast and Nuclear DNA Markers for Chinese Oaks (Quercus Subgenus Quercus) and Assessment of Their Utility as DNA Barcodes

J Yang, L Vázquez, X Chen, H Li, H Zhang… - Frontiers in Plant …, 2017 - frontiersin.org
Chloroplast DNA (cpDNA) is frequently used for species demography, evolution, and
species discrimination of plants. However, the lack of efficient and universal markers often …

Supervised DNA Barcodes species classification: analysis, comparisons and results

E Weitschek, G Fiscon, G Felici - BioData mining, 2014 - Springer
Background Specific fragments, coming from short portions of DNA (eg, mitochondrial,
nuclear, and plastid sequences), have been defined as DNA Barcode and can be used as …

The fish diversity in the upper reaches of the Salween River, Nujiang River, revealed by DNA barcoding

W Chen, X Ma, Y Shen, Y Mao, S He - Scientific Reports, 2015 - nature.com
Nujiang River (NR), an essential component of the biodiversity hotspot of the Mountains of
Southwest China, possesses a characteristic fish fauna and contains endemic species …

Out of taxonomic crypsis: a new trans-arctic cryptic species pair corroborated by phylogenetics and molecular evidence

LMS Borges, NC Treneman, T Haga… - Molecular Phylogenetics …, 2022 - Elsevier
Cryptic species are a common phenomenon in cosmopolitan marine species. The use of
molecular tools has often uncovered cryptic species occupying a fraction of the geographic …

Integer programming models for feature selection: New extensions and a randomized solution algorithm

P Bertolazzi, G Felici, P Festa, G Fiscon… - European Journal of …, 2016 - Elsevier
Feature selection methods are used in machine learning and data analysis to select a
subset of features that may be successfully used in the construction of a model for the data …

One species in eight: DNA barcodes from type specimens resolve a taxonomic quagmire

M Mutanen, M Kekkonen, SWJ Prosser… - Molecular Ecology …, 2015 - Wiley Online Library
Each holotype specimen provides the only objective link to a particular Linnean binomen.
Sequence information from them is increasingly valuable due to the growing usage of DNA …

Does a global DNA barcoding gap exist in Annelida?

S Kvist - Mitochondrial DNA Part a, 2016 - Taylor & Francis
Accurate identification of unknown specimens by means of DNA barcoding is contingent on
the presence of a DNA barcoding gap, among other factors, as its absence may result in …