Mathematical analysis of chemical reaction systems

PY Yu, G Craciun - Israel Journal of Chemistry, 2018 - Wiley Online Library
The use of mathematical methods for the analysis of chemical reaction systems has a very
long history, and involves many types of models: deterministic versus stochastic, continuous …

Foundations of chemical reaction network theory

M Feinberg - 2019 - Springer
When I am called upon to teach fluid mechanics, I always show students a copy of Newton's
Principia. I do this for a number of reasons, not least of which is the connection I hope they …

A proof of the global attractor conjecture in the single linkage class case

DF Anderson - SIAM Journal on Applied Mathematics, 2011 - SIAM
This paper is concerned with the dynamical properties of deterministically modeled chemical
reaction systems. Specifically, this paper provides a proof of the Global Attractor Conjecture …

Identifying parameter regions for multistationarity

C Conradi, E Feliu, M Mincheva… - PLoS computational …, 2017 - journals.plos.org
Mathematical modelling has become an established tool for studying the dynamics of
biological systems. Current applications range from building models that reproduce …

Toric differential inclusions and a proof of the global attractor conjecture

G Craciun - arXiv preprint arXiv:1501.02860, 2015 - arxiv.org
The global attractor conjecture says that toric dynamical systems (ie, a class of polynomial
dynamical systems on the positive orthant) have a globally attracting point within each …

A geometric approach to the global attractor conjecture

M Gopalkrishnan, E Miller, A Shiu - SIAM Journal on Applied Dynamical …, 2014 - SIAM
This paper introduces the class of strongly endotactic networks, a subclass of the endotactic
networks introduced by Craciun, Nazarov, and Pantea. The main result states that the global …

Trend to equilibrium for reaction-diffusion systems arising from complex balanced chemical reaction networks

L Desvillettes, K Fellner, BQ Tang - SIAM Journal on Mathematical Analysis, 2017 - SIAM
The quantitative convergence to equilibrium for reaction-diffusion systems arising from
complex balanced chemical reaction networks with mass action kinetics is studied using the …

On the persistence and global stability of mass-action systems

C Pantea - SIAM Journal on Mathematical Analysis, 2012 - SIAM
This paper concerns the long-term behavior of population systems, and in particular of
chemical reaction systems, modeled by deterministic mass-action kinetics. We approach two …

[HTML][HTML] Cell differentiation: What have we learned in 50 years?

SA Newman - Journal of theoretical biology, 2020 - Elsevier
I revisit two theories of cell differentiation in multicellular organisms published a half-century
ago, Stuart Kauffman's global genome regulatory dynamics (GGRD) model and Roy Britten's …

Polynomial dynamical systems, reaction networks, and toric differential inclusions

G Craciun - SIAM Journal on Applied Algebra and Geometry, 2019 - SIAM
Some of the most common mathematical models in biology, chemistry, physics, and
engineering are polynomial dynamical systems, ie, systems of differential equations with …