CyTOF® for the Masses
Mass cytometry has revolutionized immunophenotyping, particularly in exploratory settings
where simultaneous breadth and depth of characterization of immune populations is needed …
where simultaneous breadth and depth of characterization of immune populations is needed …
Current trends in flow cytometry automated data analysis software
M Cheung, JJ Campbell, L Whitby, RJ Thomas… - Cytometry Part …, 2021 - Wiley Online Library
Automated flow cytometry (FC) data analysis tools for cell population identification and
characterization are increasingly being used in academic, biotechnology, pharmaceutical …
characterization are increasingly being used in academic, biotechnology, pharmaceutical …
Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA
Advances in multiplexed in situ imaging are revealing important insights in spatial biology.
However, cell type identification remains a major challenge in imaging analysis, with most …
However, cell type identification remains a major challenge in imaging analysis, with most …
A comparison framework and guideline of clustering methods for mass cytometry data
Background With the expanding applications of mass cytometry in medical research, a wide
variety of clustering methods, both semi-supervised and unsupervised, have been …
variety of clustering methods, both semi-supervised and unsupervised, have been …
The anatomy of single cell mass cytometry data
Mass cytometry enables the measurement of up to 50 features on single cell. This has
catalyzed a shift toward multidimensional data analysis methods, rather than the manual …
catalyzed a shift toward multidimensional data analysis methods, rather than the manual …
Automated assignment of cell identity from single-cell multiplexed imaging and proteomic data
A major challenge in the analysis of highly multiplexed imaging data is the assignment of
cells to a priori known cell types. Existing approaches typically solve this by clustering cells …
cells to a priori known cell types. Existing approaches typically solve this by clustering cells …
Different approaches to Imaging Mass Cytometry data analysis
V Milosevic - Bioinformatics Advances, 2023 - academic.oup.com
Summary Imaging Mass Cytometry (IMC) is a novel, high multiplexing imaging platform
capable of simultaneously detecting and visualizing up to 40 different protein targets. It is a …
capable of simultaneously detecting and visualizing up to 40 different protein targets. It is a …
VoPo leverages cellular heterogeneity for predictive modeling of single-cell data
High-throughput single-cell analysis technologies produce an abundance of data that is
critical for profiling the heterogeneity of cellular systems. We introduce VoPo (https://github …
critical for profiling the heterogeneity of cellular systems. We introduce VoPo (https://github …
Progress and applications of mass cytometry in sketching immune landscapes
T Zhang, AR Warden, Y Li… - Clinical and Translational …, 2020 - Wiley Online Library
Recently emerged mass cytometry (cytometry by time‐of‐flight [CyTOF]) technology permits
the identification and quantification of inherently diverse cellular systems, and the …
the identification and quantification of inherently diverse cellular systems, and the …
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
Chikungunya virus (CHIKV) is a mosquito‐borne alphavirus that causes global epidemics of
debilitating disease worldwide. To gain functional insight into the host cellular genes …
debilitating disease worldwide. To gain functional insight into the host cellular genes …