A survey on deep learning: Algorithms, techniques, and applications

S Pouyanfar, S Sadiq, Y Yan, H Tian, Y Tao… - ACM computing …, 2018 - dl.acm.org
The field of machine learning is witnessing its golden era as deep learning slowly becomes
the leader in this domain. Deep learning uses multiple layers to represent the abstractions of …

Understanding subset diversity in T cell memory

SC Jameson, D Masopust - Immunity, 2018 - cell.com
Considerable advances have been made in recent years in understanding the generation
and function of memory T cells. Memory T cells are typically parsed into discreet subsets …

[HTML][HTML] Distinct cellular mechanisms underlie anti-CTLA-4 and anti-PD-1 checkpoint blockade

SC Wei, JH Levine, AP Cogdill, Y Zhao, NAAS Anang… - Cell, 2017 - cell.com
Immune-checkpoint blockade is able to achieve durable responses in a subset of patients;
however, we lack a satisfying comprehension of the underlying mechanisms of anti-CTLA-4 …

Defining the carrier proteome limit for single-cell proteomics

TK Cheung, CY Lee, FP Bayer, A McCoy, B Kuster… - Nature …, 2021 - nature.com
Single-cell proteomics by mass spectrometry (SCoPE-MS) is a recently introduced method
to quantify multiplexed single-cell proteomes. While this technique has generated great …

An immune clock of human pregnancy

N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai… - Science …, 2017 - science.org
The maintenance of pregnancy relies on finely tuned immune adaptations. We demonstrate
that these adaptations are precisely timed, reflecting an immune clock of pregnancy in …

GM-CSF: from growth factor to central mediator of tissue inflammation

B Becher, S Tugues, M Greter - Immunity, 2016 - cell.com
The granulocyte-macrophage colony-stimulating factor (GM-CSF) was initially classified as a
hematopoietic growth factor. However, unlike its close relatives macrophage CSF (M-CSF) …

Human innate lymphoid cell subsets possess tissue-type based heterogeneity in phenotype and frequency

Y Simoni, M Fehlings, HN Kløverpris, N McGovern… - Immunity, 2017 - cell.com
Animal models have highlighted the importance of innate lymphoid cells (ILCs) in multiple
immune responses. However, technical limitations have hampered adequate …

Comparison of clustering methods for high‐dimensional single‐cell flow and mass cytometry data

LM Weber, MD Robinson - Cytometry Part A, 2016 - Wiley Online Library
Recent technological developments in high‐dimensional flow cytometry and mass cytometry
(CyTOF) have made it possible to detect expression levels of dozens of protein markers in …

Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry

G Han, MH Spitzer, SC Bendall, WJ Fantl, GP Nolan - Nature protocols, 2018 - nature.com
Advances in single-cell mass cytometry have increasingly improved highly multidimensional
characterization of immune cell heterogeneity. The immunoassay multiplexing capacity …

Immune monitoring using mass cytometry and related high-dimensional imaging approaches

FJ Hartmann, SC Bendall - Nature Reviews Rheumatology, 2020 - nature.com
The cellular complexity and functional diversity of the human immune system necessitate the
use of high-dimensional single-cell tools to uncover its role in multifaceted diseases such as …