Limit Cycle Models for Circadian Rhythms Based on Transcriptional Regulation in Drosophila and Neurospora

JC Leloup, D Gonze… - Journal of biological …, 1999 - journals.sagepub.com
We examine theoretical models for circadian oscillations based on transcriptional regulation
in Drosophila and Neurospora. For Drosophila, the molecular model is based on the …

A comparative analysis of synthetic genetic oscillators

O Purcell, NJ Savery, CS Grierson… - Journal of The …, 2010 - royalsocietypublishing.org
Synthetic biology is a rapidly expanding discipline at the interface between engineering and
biology. Much research in this area has focused on gene regulatory networks that function …

Computational cell biology

CP Fall, ES Marland, JM Wagner, JJ Tyson - New York, 2002 - Springer
This text is an introduction to dynamical modeling in cell biology. It is not meant as a
complete overview of modeling or of particular models in cell biology. Rather, we use …

Spontaneous synchronization of coupled circadian oscillators

D Gonze, S Bernard, C Waltermann, A Kramer… - Biophysical journal, 2005 - cell.com
In mammals, the circadian pacemaker, which controls daily rhythms, is located in the
suprachiasmatic nucleus (SCN). Circadian oscillations are generated in individual SCN …

Experimental validation of a predicted feedback loop in the multi‐oscillator clock of Arabidopsis thaliana

JCW Locke, L Kozma‐Bognár, PD Gould… - Molecular systems …, 2006 - embopress.org
Our computational model of the circadian clock comprised the feedback loop between LATE
ELONGATED HYPOCOTYL (LHY), CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and …

Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana

JCW Locke, AJ Millar, MS Turner - Journal of theoretical biology, 2005 - Elsevier
Circadian clocks in all organisms include feedback loops that generate rhythmic expression
of key genes. We model the first such loop proposed for the clock of Arabidopsis thaliana …

(Re) inventing the circadian feedback loop

SA Brown, E Kowalska, R Dallmann - Developmental cell, 2012 - cell.com
For 20 years, researchers have thought that circadian clocks are defined by feedback loops
of transcription and translation. The rediscovery of posttranslational circadian oscillators in …

A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM

JJ Tyson, CI Hong, CD Thron, B Novak - Biophysical journal, 1999 - cell.com
Many organisms display rhythms of physiology and behavior that are entrained to the 24-h
cycle of light and darkness prevailing on Earth. Under constant conditions of illumination …

Modeling feedback loops of the mammalian circadian oscillator

S Becker-Weimann, J Wolf, H Herzel, A Kramer - Biophysical journal, 2004 - cell.com
The suprachiasmatic nucleus governs daily variations of physiology and behavior in
mammals. Within single neurons, interlocked transcriptional/translational feedback loops …

Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock

KD Edwards, JR Lynn, P Gyula, F Nagy, AJ Millar - Genetics, 2005 - academic.oup.com
Temperature compensation is a defining feature of circadian oscillators, yet no components
contributing to the phenomenon have been identified in plants. We tested 27 accessions of …