Non-adiabatic excited-state molecular dynamics: Theory and applications for modeling photophysics in extended molecular materials

TR Nelson, AJ White, JA Bjorgaard, AE Sifain… - Chemical …, 2020 - ACS Publications
Optically active molecular materials, such as organic conjugated polymers and biological
systems, are characterized by strong coupling between electronic and vibrational degrees of …

NEXMD software package for nonadiabatic excited state molecular dynamics simulations

W Malone, B Nebgen, A White, Y Zhang… - Journal of Chemical …, 2020 - ACS Publications
We present a versatile new code released for open community use, the nonadiabatic excited
state molecular dynamics (NEXMD) package. This software aims to simulate nonadiabatic …

Open-source multi-GPU-accelerated QM/MM simulations with AMBER and QUICK

VWD Cruzeiro, M Manathunga… - Journal of Chemical …, 2021 - ACS Publications
The quantum mechanics/molecular mechanics (QM/MM) approach is an essential and well-
established tool in computational chemistry that has been widely applied in a myriad of …

Extended Lagrangian Born–Oppenheimer molecular dynamics: from density functional theory to charge relaxation models

AMN Niklasson - The European Physical Journal B, 2021 - Springer
We present a review of extended Lagrangian Born–Oppenheimer molecular dynamics and
its most recent development. The molecular dynamics framework is first derived for general …

[HTML][HTML] Extended Lagrangian Born–Oppenheimer molecular dynamics using a Krylov subspace approximation

A Niklasson - The Journal of Chemical Physics, 2020 - pubs.aip.org
It is shown how the electronic equations of motion in extended Lagrangian Born–
Oppenheimer molecular dynamics simulations [AMN Niklasson, Phys. Rev. Lett. 100 …

Semi-empirical shadow molecular dynamics: A pytorch implementation

M Kulichenko, K Barros, N Lubbers… - Journal of Chemical …, 2023 - ACS Publications
Extended Lagrangian Born–Oppenheimer molecular dynamics (XL-BOMD) in its most
recent shadow potential energy version has been implemented in the semiempirical …

[HTML][HTML] Extended Lagrangian Born–Oppenheimer molecular dynamics for orbital-free density-functional theory and polarizable charge equilibration models

A Niklasson - The Journal of Chemical Physics, 2021 - pubs.aip.org
Extended Lagrangian Born–Oppenheimer molecular dynamics (XL-BOMD)[AMN Niklasson,
Phys. Rev. Lett. 100, 123004 (2008)] is formulated for orbital-free Hohenberg–Kohn density …

Density-matrix based extended Lagrangian Born–Oppenheimer molecular dynamics

AMN Niklasson - Journal of Chemical Theory and Computation, 2020 - ACS Publications
Extended Lagrangian Born–Oppenheimer molecular dynamics [Phys. Rev. Lett. 2008, 100,
123004] is presented for Hartree–Fock theory, where the extended electronic degrees of …

Extended Lagrangian Born-Oppenheimer Molecular Dynamics with DFT+ U

Y Zhang, MJ Cawkwell, CFA Negre, O Grånäs… - arXiv preprint arXiv …, 2023 - arxiv.org
Extended Lagrangian Born-Oppenheimer molecular dynamics (XL-BOMD)[Phys. Rev. Lett.
vol. 100, 123004 (2008)] is combined with Kohn-Sham density functional theory (DFT) using …

Spin-Polarized Extended Lagrangian Born-Oppenheimer Molecular Dynamics

Y Zhang, MJ Cawkwell, CFA Negre, R Perriot… - arXiv preprint arXiv …, 2023 - arxiv.org
We present a generalization of Extended Lagrangian Born-Oppenheimer molecular
dynamics [Phys. Rev. Lett. vol. 100, 123004 (2008); Eur. Phys. J. B vol. 94, 164 (2021)] that …