Stochasticity in gene expression: from theories to phenotypes

M Kaern, TC Elston, WJ Blake, JJ Collins - Nature Reviews Genetics, 2005 - nature.com
Genetically identical cells exposed to the same environmental conditions can show
significant variation in molecular content and marked differences in phenotypic …

The role of the microenvironment in tumor growth and invasion

Y Kim, MA Stolarska, HG Othmer - Progress in biophysics and molecular …, 2011 - Elsevier
Mathematical modeling and computational analysis are essential for understanding the
dynamics of the complex gene networks that control normal development and homeostasis …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

[图书][B] The Control Handbook (three volume set)

WS Levine - 2018 - taylorfrancis.com
At publication, The Control Handbook immediately became the definitive resource that
engineers working with modern control systems required. Among its many accolades, that …

Holimap: an accurate and efficient method for solving stochastic gene network dynamics

C Jia, R Grima - Nature Communications, 2024 - nature.com
Gene-gene interactions are crucial to the control of sub-cellular processes but our
understanding of their stochastic dynamics is hindered by the lack of simulation methods …

Markovian dynamics on complex reaction networks

J Goutsias, G Jenkinson - Physics reports, 2013 - Elsevier
Complex networks, comprised of individual elements that interact with each other through
reaction channels, are ubiquitous across many scientific and engineering disciplines …

Bayesian inference of biochemical kinetic parameters using the linear noise approximation

M Komorowski, B Finkenstädt, CV Harper, DA Rand - BMC bioinformatics, 2009 - Springer
Background Fluorescent and luminescent gene reporters allow us to dynamically quantify
changes in molecular species concentration over time on the single cell level. The …

Optimal feedback strength for noise suppression in autoregulatory gene networks

A Singh, JP Hespanha - Biophysical journal, 2009 - cell.com
Autoregulatory feedback loops, where the protein expressed from a gene inhibits or
activates its own expression are common gene network motifs within cells. In these …

Transcriptional stochasticity in gene expression

T Lipniacki, P Paszek, A Marciniak-Czochra… - Journal of theoretical …, 2006 - Elsevier
Due to the small number of copies of molecular species involved, such as DNA, mRNA and
regulatory proteins, gene expression is a stochastic phenomenon. In eukaryotic cells, the …

[图书][B] Control system applications

WS Levine - 1999 - books.google.com
Control technology permeates every aspect of our lives. We rely on them to perform a wide
variety of tasks without giving much thought to the origins of the technology or how it became …