MCCCS Towhee: a tool for Monte Carlo molecular simulation

MG Martin - Molecular Simulation, 2013 - Taylor & Francis
The history of the Monte Carlo for complex chemical systems Towhee open source Monte
Carlo molecular simulation tool is discussed. A proof is given that the Widom insertion …

BioMOCA—a Boltzmann transport Monte Carlo model for ion channel simulation

TA Van der Straaten, G Kathawala, A Trellakis… - Molecular …, 2005 - Taylor & Francis
With the recent availability of high-resolution structural information for several key ion
channel proteins and large-scale computational resources, Molecular Dynamics has …

Incorporation of inhomogeneous ion diffusion coefficients into kinetic lattice grand canonical Monte Carlo simulations and application to ion current calculations in a …

H Hwang, GC Schatz, MA Ratner - The Journal of Physical …, 2007 - ACS Publications
To deal with inhomogeneous diffusion coefficients of ions without altering the lattice spacing
in the kinetic lattice grand canonical Monte Carlo (KLGCMC) simulation, an algorithm that …

Memoryless control of boundary concentrations of diffusing particles

A Singer, Z Schuss, B Nadler, RS Eisenberg - Physical Review E—Statistical …, 2004 - APS
Flux between regions of different concentration occurs in nearly every device involving
diffusion, whether an electrochemical cell, a bipolar transistor, or a protein channel in a …

Kinetic lattice grand canonical Monte Carlo simulation for ion current calculations in a model ion channel system

H Hwang, GC Schatz, MA Ratner - The Journal of chemical physics, 2007 - pubs.aip.org
An algorithm in which kinetic lattice grand canonical Monte Carlo simulations are combined
with mean field theory (KLGCMC/MF) is presented to calculate ion currents in a model ion …

A computational kinetic model of diffusion for molecular systems

I Teo, K Schulten - The Journal of Chemical Physics, 2013 - pubs.aip.org
Regulation of biomolecular transport in cells involves intra-protein steps like gating and
passage through channels, but these steps are preceded by extra-protein steps, namely …

Hierarchical Hybrid Materials from Flexible Fabric Substrates

W Wang - 2020 - corescholar.libraries.wright.edu
The goal of this project is to investigate fabrication approaches and structure-property
relationships of porous and flexible hierarchical hybrid solids suitable for advanced surface …

Models of boundary behavior of particles diffusing between two concentrations

A Singer, Z Schuss, B Nadler… - Fluctuations and Noise …, 2004 - spiedigitallibrary.org
Flux between regions of different concentration occurs in nearly every device involving
diffusion, whether an electrochemical cell, a bipolar transistor, or a protein channel in a …

Electro-chemical modeling challenges of biological ion pumps

RF Rakowski, S Kaya, J Fonseca - Journal of computational electronics, 2005 - Springer
We outline the basic operational, structural and functional features of ion motive ATPases:
trans-membrane proteins central to biological functions of all animal cells. As an example …

Device engineering approaches to the simulation of charge transport in biological ion channels

TA van der Straaten, G Kathawala… - … of Computational and …, 2006 - ingentaconnect.com
Ion channel proteins are naturally occurring nanostructures that regulate the environment of
biological cells. The study of ion channels is particularly interesting to device engineers …