The impact of retrotransposons on human genome evolution

R Cordaux, MA Batzer - Nature reviews genetics, 2009 - nature.com
Their ability to move within genomes gives transposable elements an intrinsic propensity to
affect genome evolution. Non-long terminal repeat (LTR) retrotransposons—including LINE …

The influence of LINE‐1 and SINE retrotransposons on mammalian genomes

SR Richardson, AJ Doucet, HC Kopera… - Mobile DNA …, 2015 - Wiley Online Library
Transposable elements (TEs) or “jumping genes” historically have been disparaged as a
class of “junk DNA” in mammalian genomes (1, 2). The advent of whole genome DNA …

DNA methylation on N6-adenine in mammalian embryonic stem cells

TP Wu, T Wang, MG Seetin, Y Lai, S Zhu, K Lin, Y Liu… - Nature, 2016 - nature.com
It has been widely accepted that 5-methylcytosine is the only form of DNA methylation in
mammalian genomes. Here we identify N 6-methyladenine as another form of DNA …

Initial sequencing and comparative analysis of the mouse genome

European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …

X-inactivation profile reveals extensive variability in X-linked gene expression in females

L Carrel, HF Willard - Nature, 2005 - nature.com
In female mammals, most genes on one X chromosome are silenced as a result of X-
chromosome inactivation,. However, some genes escape X-inactivation and are expressed …

Genes in conflict: the biology of selfish genetic elements

A Burt, R Trivers - Genes in Conflict, 2009 - degruyter.com
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Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers

DT Ting, D Lipson, S Paul, BW Brannigan… - science, 2011 - science.org
Satellite repeats in heterochromatin are transcribed into noncoding RNAs that have been
linked to gene silencing and maintenance of chromosomal integrity. Using digital gene …

X-chromosome inactivation: a crossroads between chromosome architecture and gene regulation

R Galupa, E Heard - Annual review of genetics, 2018 - annualreviews.org
In somatic nuclei of female therian mammals, the two X chromosomes display very different
chromatin states: One X is typically euchromatic and transcriptionally active, and the other is …

The DNA sequence of the human X chromosome

MT Ross, DV Grafham, AJ Coffey, S Scherer, K McLay… - Nature, 2005 - nature.com
The human X chromosome has a unique biology that was shaped by its evolution as the sex
chromosome shared by males and females. We have determined 99.3% of the euchromatic …

LINE-1 elements in structural variation and disease

CR Beck, JL Garcia-Perez, RM Badge… - Annual review of …, 2011 - annualreviews.org
The completion of the human genome reference sequence ushered in a new era for the
study and discovery of human transposable elements. It now is undeniable that …