Chromatin accessibility: a window into the genome

M Tsompana, MJ Buck - Epigenetics & chromatin, 2014 - Springer
Transcriptional activation throughout the eukaryotic lineage has been tightly linked with
disruption of nucleosome organization at promoters, enhancers, silencers, insulators and …

The cancer COMPASS: navigating the functions of MLL complexes in cancer

DJ Ford, AK Dingwall - Cancer genetics, 2015 - Elsevier
The mixed-lineage leukemia family of histone methyltransferases (MLL1–4, or KMT2A–D)
were previously linked to cancer through the founding member, MLL1/KMT2A, which is often …

Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress

TA Lee, J Bailey-Serres - The Plant Cell, 2019 - academic.oup.com
Gene regulation is a dynamic process involving changes ranging from the remodeling of
chromatin to preferential translation. To understand integrated nuclear and cytoplasmic …

BAP1, PBRM1 and SETD2 in clear-cell renal cell carcinoma: molecular diagnostics and possible targets for personalized therapies

F Piva, M Santoni, MR Matrana, S Satti… - Expert review of …, 2015 - Taylor & Francis
Several novel recurrent mutations of histone modifying and chromatin remodeling genes
have been identified in renal cell carcinoma. These mutations cause loss of function of …

High-resolution profiling of histone h3 lysine 36 trimethylation in metastatic renal cell carcinoma

TH Ho, IY Park, H Zhao, P Tong, MD Champion, H Yan… - Oncogene, 2016 - nature.com
Mutations in SETD2, a histone H3 lysine trimethyltransferase, have been identified in clear
cell renal cell carcinoma (ccRCC); however it is unclear if loss of SETD2 function alters the …

Aberrant activity of histone–lysine n-methyltransferase 2 (Kmt2) complexes in oncogenesis

E Poreba, K Lesniewicz, J Durzynska - International journal of molecular …, 2020 - mdpi.com
KMT2 (histone-lysine N-methyltransferase subclass 2) complexes methylate lysine 4 on the
histone H3 tail at gene promoters and gene enhancers and, thus, control the process of …

Multiple tumor suppressors regulate a HIF-dependent negative feedback loop via ISGF3 in human clear cell renal cancer

L Liao, ZZ Liu, L Langbein, W Cai, EA Cho, J Na, X Niu… - Elife, 2018 - elifesciences.org
Whereas VHL inactivation is a primary event in clear cell renal cell carcinoma (ccRCC), the
precise mechanism (s) of how this interacts with the secondary mutations in tumor …

The roles of chromatin-remodelers and epigenetic modifiers in kidney cancer

L Liao, JR Testa, H Yang - Cancer genetics, 2015 - Elsevier
Clear cell renal cell carcinoma (ccRCC) is the major subtype of kidney cancer that is
characterized by frequent inactivation of the von Hippel-Lindau (VHL) gene in 80–90% of …

Stability of single copy transgene expression in CHOK1 cells is affected by histone modifications but not by DNA methylation

S Spencer, A Gugliotta, J Koenitzer, H Hauser… - Journal of …, 2015 - Elsevier
Intraclonal heterogeneity of genetically modified mammalian cells has been observed as a
phenomenon that has a strong impact on overall transgene expression levels and that limits …

[HTML][HTML] Identification of a signature of histone modifiers in kidney renal clear cell carcinoma

Y Huang, Z Yang, Y Tang, H Chen, T Liu… - Aging (Albany …, 2024 - ncbi.nlm.nih.gov
Kidney renal clear cell carcinoma (KIRC) is a cancer that is closely associated with
epigenetic alterations, and histone modifiers (HMs) are closely related to epigenetic …