RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference

BK Maples, S Gravel, EE Kenny… - The American Journal of …, 2013 - cell.com
Local-ancestry inference is an important step in the genetic analysis of fully sequenced
human genomes. Current methods can only detect continental-level ancestry (ie, European …

Evaluating the use of ABBA–BABA statistics to locate introgressed loci

SH Martin, JW Davey, CD Jiggins - Molecular biology and …, 2015 - academic.oup.com
Several methods have been proposed to test for introgression across genomes. One method
tests for a genome-wide excess of shared derived alleles between taxa using Patterson's D …

Global and local ancestry and its importance: a review

RC Goli, KG Chishi, I Ganguly, S Singh… - Current …, 2024 - benthamdirect.com
The fastest way to significantly change the composition of a population is through admixture,
an evolutionary mechanism. In animal breeding history, genetic admixture has provided …

Inferring ancestry from population genomic data and its applications

B Padhukasahasram - Frontiers in genetics, 2014 - frontiersin.org
Ancestry inference is a frequently encountered problem and has many applications such as
forensic analyses, genetic association studies, and personal genomics. The main goal of …

Barley landraces are characterized by geographically heterogeneous genomic origins

AM Poets, Z Fang, MT Clegg, PL Morrell - Genome biology, 2015 - Springer
Background The genetic provenance of domesticated plants and the routes along which
they were disseminated in prehistory have been a long-standing source of debate. Much of …

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

JL Rodriguez-Flores, K Fakhro, F Agosto-Perez… - Genome …, 2016 - genome.cshlp.org
An open question in the history of human migration is the identity of the earliest Eurasian
populations that have left contemporary descendants. The Arabian Peninsula was the initial …

Ancestry, admixture and fitness in Colombian genomes

L Rishishwar, AB Conley, CH Wigington, L Wang… - Scientific reports, 2015 - nature.com
The human dimension of the Columbian Exchange entailed substantial genetic admixture
between ancestral source populations from Africa, the Americas and Europe, which had …

Ancestry composition: a novel, efficient pipeline for ancestry deconvolution

EY Durand, CB Do, JL Mountain, JM Macpherson - biorxiv, 2014 - biorxiv.org
Ancestry deconvolution, the task of identifying the ancestral origin of chromosomal segments
in admixed individuals, has important implications, from mapping disease genes to …

Diet networks: thin parameters for fat genomics

A Romero, PL Carrier, A Erraqabi, T Sylvain… - arXiv preprint arXiv …, 2016 - arxiv.org
Learning tasks such as those involving genomic data often poses a serious challenge: the
number of input features can be orders of magnitude larger than the number of training …

[HTML][HTML] Distinct genetic variation and heterogeneity of the Iranian population

Z Mehrjoo, Z Fattahi, M Beheshtian, M Mohseni… - PLoS …, 2019 - journals.plos.org
Iran, despite its size, geographic location and past cultural influence, has largely been a
blind spot for human population genetic studies. With only sparse genetic information on the …