[HTML][HTML] Integration strategies of multi-omics data for machine learning analysis

M Picard, MP Scott-Boyer, A Bodein, O Périn… - Computational and …, 2021 - Elsevier
Increased availability of high-throughput technologies has generated an ever-growing
number of omics data that seek to portray many different but complementary biological …

Multi-omics integration in biomedical research–A metabolomics-centric review

MA Wörheide, J Krumsiek, G Kastenmüller… - Analytica chimica …, 2021 - Elsevier
Recent advances in high-throughput technologies have enabled the profiling of multiple
layers of a biological system, including DNA sequence data (genomics), RNA expression …

DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays

A Singh, CP Shannon, B Gautier, F Rohart… - …, 2019 - academic.oup.com
Motivation In the continuously expanding omics era, novel computational and statistical
strategies are needed for data integration and identification of biomarkers and molecular …

Microplastics in surface waters and sediments of the Wei River, in the northwest of China

L Ding, R fan Mao, X Guo, X Yang, Q Zhang… - Science of the Total …, 2019 - Elsevier
Microplastic pollution is an increasingly important environment problem. Many studies show
the occurrence of microplastics in our environmental system. However, the freshwater …

A novel sparse compositional technique reveals microbial perturbations

C Martino, JT Morton, CA Marotz, LR Thompson… - …, 2019 - Am Soc Microbiol
The central aims of many host or environmental microbiome studies are to elucidate factors
associated with microbial community compositions and to relate microbial features to …

[HTML][HTML] Most dominant roles of insect gut bacteria: digestion, detoxification, or essential nutrient provision?

TZ Jing, FH Qi, ZY Wang - Microbiome, 2020 - Springer
The insect gut microbiota has been shown to contribute to the host's digestion, detoxification,
development, pathogen resistance, and physiology. However, there is poor information …

[图书][B] Numerical ecology with R

D Borcard, F Gillet, P Legendre - 2011 - Springer
Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical
Ecology and the implementation of this discipline in the R language. After short theoretical …

Chondroitin sulfate proteoglycans prevent immune cell phenotypic conversion and inflammation resolution via TLR4 in rodent models of spinal cord injury

I Francos-Quijorna, M Sánchez-Petidier… - Nature …, 2022 - nature.com
Chondroitin sulfate proteoglycans (CSPGs) act as potent inhibitors of axonal growth and
neuroplasticity after spinal cord injury (SCI). Here we reveal that CSPGs also play a critical …

Widely targeted metabolomics analysis of white peony teas with different storage time and association with sensory attributes

FY Fan, CS Huang, YL Tong, HW Guo, SJ Zhou, JH Ye… - Food Chemistry, 2021 - Elsevier
The sensory features of white peony teas (WPTs) significantly change with storage age;
however, their comprehensive associations with composition are still unclear. This study …

Enter the matrix: factorization uncovers knowledge from omics

GL Stein-O'Brien, R Arora, AC Culhane, AV Favorov… - Trends in Genetics, 2018 - cell.com
Omics data contain signals from the molecular, physical, and kinetic inter-and intracellular
interactions that control biological systems. Matrix factorization (MF) techniques can reveal …