From RNA-seq reads to differential expression results

A Oshlack, MD Robinson, MD Young - Genome biology, 2010 - Springer
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[HTML][HTML] Cell signaling during development of Dictyostelium

WF Loomis - Developmental biology, 2014 - Elsevier
Continuous communication between cells is necessary for development of any multicellular
organism and depends on the recognition of secreted signals. A wide range of molecules …

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

CW Law, Y Chen, W Shi, GK Smyth - Genome biology, 2014 - Springer
New normal linear modeling strategies are presented for analyzing read counts from RNA-
seq experiments. The voom method estimates the mean-variance relationship of the log …

Data fusion by matrix factorization

M Žitnik, B Zupan - IEEE transactions on pattern analysis and …, 2014 - ieeexplore.ieee.org
For most problems in science and engineering we can obtain data sets that describe the
observed system from various perspectives and record the behavior of its individual …

Gene expression networks regulated by human personality

C Del Val, E Díaz de la Guardia-Bolívar, I Zwir… - Molecular …, 2024 - nature.com
Genome-wide association studies of human personality have been carried out, but
transcription of the whole genome has not been studied in relation to personality in humans …

One Stop Shop for Everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012

P Fey, RJ Dodson, S Basu, RL Chisholm - Dictyostelium discoideum …, 2013 - Springer
Abstract dictyBase (http://dictybase. org), the model organism database for Dictyostelium
discoideum, includes the complete genome sequence and expression data for this …

A shifting role of thalamocortical connectivity in the emergence of cortical functional organization

S Park, KV Haak, S Oldham, H Cho, K Byeon… - Nature …, 2024 - nature.com
The cortical patterning principle has been a long-standing question in neuroscience, yet
how this translates to macroscale functional specialization in the human brain remains …

Lamins as structural nuclear elements through evolution

J Odell, J Lammerding - Current Opinion in Cell Biology, 2023 - Elsevier
Lamins are nuclear intermediate filament proteins with important, well-established roles in
humans and other vertebrates. Lamins interact with DNA and numerous proteins at the …

Terpene synthase genes in eukaryotes beyond plants and fungi: Occurrence in social amoebae

X Chen, TG Köllner, Q Jia, A Norris… - Proceedings of the …, 2016 - National Acad Sciences
Terpenes are structurally diverse natural products involved in many ecological interactions.
The pivotal enzymes for terpene biosynthesis, terpene synthases (TPSs), had been …

Bleb-driven chemotaxis of Dictyostelium cells

E Zatulovskiy, R Tyson, T Bretschneider… - Journal of Cell Biology, 2014 - rupress.org
Blebs and F-actin–driven pseudopods are alternative ways of extending the leading edge of
migrating cells. We show that Dictyostelium cells switch from using predominantly …